Sjc_0088020 (Schistosoma japonicum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Sjc_0088020 T334982_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tcf7
M00193_2.00 		Mus musculus
HNHNNNNNN
NNNNNNDND		 PBM
Badis et al.(2009)
Tcf7_0950 		0.682 0.826
Tcf7
M03532_2.00 		Mus musculus
AAASATCAAAGV
BCTTTGATSTTT		 SELEX
Jolma et al.(2013)
Tcf7_1 		0.682 0.826
TCF7
M05755_2.00 		Homo sapiens
DSATCAAWS
SWTTGATSH		 SELEX
Yin et al.(2017)
TCF7_eDBD_HT-SELEX_1 		0.682 0.826
TCF7
M05756_2.00 		Homo sapiens
WCWKCGYCYCGWTGW
WCAWCGRGRCGMWGW		 SELEX
Yin et al.(2017)
TCF7_eDBD_HT-SELEX_2 		0.682 0.826
TCF7
M05890_2.00 		Homo sapiens
NNASATCAAASNN
NNSTTTGATSTNN		 SMiLE-seq
Isakova et al.(2017)
TCF7 		0.682 0.826
TCF7
M09386_2.00 		Homo sapiens
NBBCTTTSAWSTBNBN
NVNVASWTSAAAGVVN		 Misc
Kulakovskiy et al.(2013)
TCF7_HUMAN.H11MO.0.A 		0.682 0.826
Tcf7
M09400_2.00 		Mus musculus
VVRVADSAAARVVVNV
BNBBBYTTTSHTBYBB		 Misc
Kulakovskiy et al.(2013)
TCF7_MOUSE.H11MO.0.A 		0.682 0.826
TCF7
M11294_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF1_Q5_01 		0.682 0.826
TCF7
M11295_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF1_Q5 		0.682 0.826
TCF7
M05757_2.00 		Homo sapiens
RSATCAAAS
STTTGATSY		 SELEX
Yin et al.(2017)
TCF7_eDBD_Methyl-HT-SELEX_1 		0.682 0.826
TCF7
M05758_2.00 		Homo sapiens
WCAWCGRGRCGMWGW
WCWKCGYCYCGWTGW		 SELEX
Yin et al.(2017)
TCF7_eDBD_Methyl-HT-SELEX_2 		0.682 0.826
Tcf7l2
M00198_2.00 		Mus musculus
NSWTCAAAVN
NBTTTGAWSN		 PBM
Badis et al.(2009)
Tcf7l2_3461 		0.657 0.812
Lef1
M00200_2.00 		Mus musculus
NSWTCAAAVN
NBTTTGAWSN		 PBM
Badis et al.(2009)
Lef1_3504 		0.657 0.812
LEF1
M03511_2.00 		Homo sapiens
NRAGATCAAAGRVWW
WWBYCTTTGATCTYN		 SELEX
Jolma et al.(2013)
LEF1_1 		0.657 0.812
LEF1
M05771_2.00 		Homo sapiens
NSATCAAAS
STTTGATSN		 SELEX
Yin et al.(2017)
LEF1_eDBD_HT-SELEX_1 		0.657 0.812
LEF1
M05772_2.00 		Homo sapiens
WCATCGRGRCGCTGW
WCAGCGYCYCGATGW		 SELEX
Yin et al.(2017)
LEF1_eDBD_HT-SELEX_2 		0.657 0.812
LEF1
M05775_2.00 		Homo sapiens
ASATCAAAG
CTTTGATST		 SELEX
Yin et al.(2017)
LEF1_FL_HT-SELEX_1 		0.657 0.812
LEF1
M05776_2.00 		Homo sapiens
ACATCGRGRCGCTGW
WCAGCGYCYCGATGT		 SELEX
Yin et al.(2017)
LEF1_FL_HT-SELEX_2 		0.657 0.812
LEF1
M05895_2.00 		Homo sapiens
WTCAAAGNNN
NNNCTTTGAW		 SMiLE-seq
Isakova et al.(2017)
LEF1 		0.657 0.812
Tcf7l2
M02646_2.00 		Mus musculus
SATCAAAGN
NCTTTGATS		 SELEX
Hallikas et al.(2006)
Tcf4 		0.657 0.812
TCF7L2
M08167_2.00 		Homo sapiens
NVASWTCAAAGVVN
NBBCTTTGAWSTBN		 ChIP-seq
Mathelier et al.(2014)
MA0523.1 		0.657 0.812
TCF7L2
M09393_2.00 		Homo sapiens
DGCAGSTGKS
SMCASCTGCH		 Misc
Kulakovskiy et al.(2013)
ITF2_HUMAN.H11MO.0.C 		0.657 0.812
LEF1
M09392_2.00 		Homo sapiens
BSYTTTSWNNTBYH
DRVANNWSAAARSV		 Misc
Kulakovskiy et al.(2013)
LEF1_HUMAN.H11MO.0.A 		0.657 0.812
TCF7L2
M09394_2.00 		Homo sapiens
VVASWTCAAAGVV
BBCTTTGAWSTBB		 Misc
Kulakovskiy et al.(2013)
TF7L2_HUMAN.H11MO.0.A 		0.657 0.812
Lef1
M09402_2.00 		Mus musculus
BSYTTTSWNNTBYH
DRVANNWSAAARSV		 Misc
Kulakovskiy et al.(2013)
LEF1_MOUSE.H11MO.0.B 		0.657 0.812
Tcf7l2
M09401_2.00 		Mus musculus
VVASWTCAAAGVV
BBCTTTGAWSTBB		 Misc
Kulakovskiy et al.(2013)
TF7L2_MOUSE.H11MO.0.A 		0.657 0.812
TCF7L2
M09638_2.00 		Homo sapiens
CCTTTGAWST
ASWTCAAAGG		 Misc
Heinz et al.(2010)
K562-TCF7L2_GSE29196 		0.657 0.812
LEF1
M11311_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LEF1_Q2_01 		0.657 0.812
LEF1
M11312_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LEF1_Q3 		0.657 0.812
LEF1
M11313_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LEF1_Q4 		0.657 0.812
LEF1
M11314_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LEF1_Q5_01 		0.657 0.812
LEF1
M11315_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LEF1_Q5 		0.657 0.812
TCF7L2
M11316_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF4_Q5_01 		0.657 0.812
TCF7L2
M11317_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF4_Q5_02 		0.657 0.812
TCF7L2
M11318_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF4_Q5 		0.657 0.812
TCF7L2
M11319_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF7L2_06 		0.657 0.812
LEF1
M05773_2.00 		Homo sapiens
ASATCAAAG
CTTTGATST		 SELEX
Yin et al.(2017)
LEF1_eDBD_Methyl-HT-SELEX_1 		0.657 0.812
LEF1
M05774_2.00 		Homo sapiens
WCATCGRGGCGCTGW
WCAGCGCCYCGATGW		 SELEX
Yin et al.(2017)
LEF1_eDBD_Methyl-HT-SELEX_2 		0.657 0.812
LEF1
M05777_2.00 		Homo sapiens
ASATCAAAG
CTTTGATST		 SELEX
Yin et al.(2017)
LEF1_FL_Methyl-HT-SELEX_1 		0.657 0.812
LEF1
M05778_2.00 		Homo sapiens
ACATCGRGRCGCTGW
WCAGCGYCYCGATGT		 SELEX
Yin et al.(2017)
LEF1_FL_Methyl-HT-SELEX_2 		0.657 0.812
Tcf7l1
M00207_2.00 		Mus musculus
NNNNWWDN
NHWWNNNN		 PBM
Badis et al.(2009)
Tcf3_3787 		0.657 0.783
TCF7L1
M03512_2.00 		Homo sapiens
AAAGATCAAAGG
CCTTTGATCTTT		 SELEX
Jolma et al.(2013)
TCF7L1_1 		0.657 0.783
TCF7L1
M05779_2.00 		Homo sapiens
RSATCAAAG
CTTTGATSY		 SELEX
Yin et al.(2017)
TCF7L1_eDBD_HT-SELEX_1 		0.657 0.783
TCF7L1
M05780_2.00 		Homo sapiens
ACATCGRGRCGCTGW
WCAGCGYCYCGATGT		 SELEX
Yin et al.(2017)
TCF7L1_eDBD_HT-SELEX_2 		0.657 0.783
TCF7L1
M09395_2.00 		Homo sapiens
NBBCTTTGAWSTB
VASWTCAAAGVVN		 Misc
Kulakovskiy et al.(2013)
TF7L1_HUMAN.H11MO.0.B 		0.657 0.783
Tcf7l1
M09406_2.00 		Mus musculus
BBCTTTGAWST
ASWTCAAAGVV		 Misc
Kulakovskiy et al.(2013)
TF7L1_MOUSE.H11MO.0.A 		0.657 0.783
Tcf7l1
M09407_2.00 		Mus musculus
NDGCAGSTGBB
VVCASCTGCHN		 Misc
Kulakovskiy et al.(2013)
TFE2_MOUSE.H11MO.0.A 		0.657 0.783
TCF7L1
M11320_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF3_01 		0.657 0.783
TCF7L1
M11321_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF3_Q6_01 		0.657 0.783
TCF7L1
M11322_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF3_Q6 		0.657 0.783
TCF7L1
M05781_2.00 		Homo sapiens
CTTTGATSY
RSATCAAAG		 SELEX
Yin et al.(2017)
TCF7L1_eDBD_Methyl-HT-SELEX_1 		0.657 0.783
TCF7L1
M05782_2.00 		Homo sapiens
ACATCGRGRCGCTGW
WCAGCGYCYCGATGT		 SELEX
Yin et al.(2017)
TCF7L1_eDBD_Methyl-HT-SELEX_2 		0.657 0.783
pan
M06451_2.00 		Drosophila melanogaster
DWYCAAAD
HTTTGRWH		 B1H
Zhu et al.(2011)
pan_FlyReg_FBgn0085432 		0.636 0.768
pan
M08428_2.00 		Drosophila melanogaster
WHNAAAVRNRSCGM
KCGSYNYBTTTNDW		 ChIP-chip
Mathelier et al.(2014)
MA0237.2 		0.636 0.768
pan
M11337_2.00 		Drosophila melanogaster
AAGATCAAAGG
CCTTTGATCTT		 Transfac
Matys et al.(2006)
I$TCF_1 		0.636 0.768
pan
M11338_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$TCF_Q6 		0.636 0.768
pop-1
M00712_2.00 		Caenorhabditis elegans
NNHDWVNNNN
NNNNBWHDNN		 PBM
Narasimhan et al.(2015)
pTH9135 		0.568 0.551
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CPRT0000008286 Sox 396 464

Links

Other Sox family TFs
Other Schistosoma japonicum TFs

500 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PHR1 Arabidopsis lyrata fgenesh2_kg.7__1335__AT4G28610.1 I
fgenesh2_kg.5__121__AT2G02060.1 Arabidopsis lyrata fgenesh2_kg.5__121__AT2G02060.1 I
fgenesh2_kg.1__1592__AT1G14600.1 Arabidopsis lyrata fgenesh2_kg.1__1592__AT1G14600.1 I
AT2G02060 Arabidopsis thaliana AT2G02060 I
AT1G14600 Arabidopsis thaliana AT1G14600 D
AT4G04605 Arabidopsis thaliana AT4G04605 I
PHR1 Arabidopsis thaliana AT4G28610 D
Bostr.0556s0031 Boechera stricta Bostr.0556s0031 I
Bostr.7199s0006 Boechera stricta Bostr.7199s0006 I
Bostr.7867s0704 Boechera stricta Bostr.7867s0704 I
Bostr.24340s0004 Boechera stricta Bostr.24340s0004 I
Bo2g104640 Brassica oleracea Bo2g104640 I
Bo2g134900 Brassica oleracea Bo2g134900 I
Bo8g054450 Brassica oleracea Bo8g054450 I
Bo7g080160 Brassica oleracea Bo7g080160 I
Bo5g019810 Brassica oleracea Bo5g019810 I
Bra026202 Brassica rapa Bra026202 I
Bra026618 Brassica rapa Bra026618 I
Bra024836 Brassica rapa Bra024836 I
Bra010355 Brassica rapa Bra010355 I
PK05732.1 Cannabis sativa PK05732.1 D
Cagra.4137s0013 Capsella grandiflora Cagra.4137s0013 N
Cagra.4137s0009 Capsella grandiflora Cagra.4137s0009 I
Cagra.3501s0036 Capsella grandiflora Cagra.3501s0036 I
Cagra.1225s0029 Capsella grandiflora Cagra.1225s0029 I
Cagra.0549s0004 Capsella grandiflora Cagra.0549s0004 I
Carubv10003097m.g Capsella rubella Carubv10003097m.g I
Carubv10010057m.g Capsella rubella Carubv10010057m.g I
Carubv10017538m.g Capsella rubella Carubv10017538m.g I
Ca_00645 Cicer arietinum Ca_00645 I
Ciclev10032941m.g Citrus clementina Ciclev10032941m.g I
orange1.1g029903m.g Citrus sinensis orange1.1g029903m.g I
Eucgr.A02031 Eucalyptus grandis Eucgr.A02031 I
Eucgr.D01346 Eucalyptus grandis Eucgr.D01346 I
Thhalv10004791m.g Eutrema salsugineum Thhalv10004791m.g I
Thhalv10025330m.g Eutrema salsugineum Thhalv10025330m.g I
Thhalv10008620m.g Eutrema salsugineum Thhalv10008620m.g I
Thhalv10017090m.g Eutrema salsugineum Thhalv10017090m.g I
gene19641-v1.0-hybrid Fragaria vesca gene19641-v1.0-hybrid I
GLYMA14G03527 Glycine max GLYMA14G03527 I
GLYMA15G11576 Glycine max GLYMA15G11576 I
GLYMA18G14071 Glycine max GLYMA18G14071 I
GLYMA09G00685 Glycine max GLYMA09G00685 I
GLYMA20G24290 Glycine max GLYMA20G24290 I
Gorai.010G181100 Gossypium raimondii Gorai.010G181100 I
Gorai.009G329400 Gossypium raimondii Gorai.009G329400 I
MLOC_56821 Hordeum vulgare MLOC_56821 I
Lus10001149.g Linum usitatissimum Lus10001149.g I
Lus10029808.g Linum usitatissimum Lus10029808.g I
LjSGA_025887.1 Lotus japonicus LjSGA_025887.1 N
chr5.LjT14K23.60.nc Lotus japonicus chr5.LjT14K23.60.nc I
MDP0000196504 Malus domestica MDP0000196504 I
MDP0000214282 Malus domestica MDP0000214282 I
cassava11204.m1 Manihot esculenta cassava11204.m1 I
cassava15362.m1 Manihot esculenta cassava15362.m1 I
MTR_2g016220 Medicago truncatula MTR_2g016220 I
MTR_2g023580 Medicago truncatula MTR_2g023580 I
mgf023762m Mimulus guttatus mgf023762m I
GSMUA_Achr5G19200_001 Musa acuminata GSMUA_Achr5G19200_001 I
Pavir.Aa00827 Panicum virgatum Pavir.Aa00827 I
Pavir.Ab02674 Panicum virgatum Pavir.Ab02674 I
PDK_20s1498711g001 Phoenix dactylifera PDK_20s1498711g001 I
POPTR_0002s05770 Populus trichocarpa POPTR_0002s05770 I
POPTR_0004s01060 Populus trichocarpa POPTR_0004s01060 I
POPTR_0010s10990 Populus trichocarpa POPTR_0010s10990 I
POPTR_0018s14830 Populus trichocarpa POPTR_0018s14830 I
POPTR_0021s00430 Populus trichocarpa POPTR_0021s00430 I
Pm014775 Prunus mume Pm014775 I
PRUPE_ppa023518mg Prunus persica PRUPE_ppa023518mg I
PRUPE_ppa015662mg Prunus persica PRUPE_ppa015662mg I
29842.m003572 Ricinus communis 29842.m003572 I
SapurV1A.3361s0010 Salix purpurea SapurV1A.3361s0010 I
SapurV1A.0429s0100 Salix purpurea SapurV1A.0429s0100 I
SapurV1A.0354s0280 Salix purpurea SapurV1A.0354s0280 I
Solyc02g080860.1 Solanum lycopersicum Solyc02g080860.1 I
Solyc12g006280.1 Solanum lycopersicum Solyc12g006280.1 I
PGSC0003DMG400029440 Solanum tuberosum PGSC0003DMG400029440 I
PGSC0003DMG400028830 Solanum tuberosum PGSC0003DMG400028830 I
PGSC0003DMG400000922 Solanum tuberosum PGSC0003DMG400000922 I
TCM_030248 Theobroma cacao TCM_030248 I
TCM_001942 Theobroma cacao TCM_001942 I
VIT_13s0067g01500 Vitis vinifera VIT_13s0067g01500 I
GRMZM2G106185 Zea mays GRMZM2G106185 I
GRMZM2G069525 Zea mays GRMZM2G069525 I
GRMZM2G010920 Zea mays GRMZM2G010920 I