Bra005902 (Brassica rapa)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00352 (TBP) IPR000814 Bra005902 T342162_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.777 0.777
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.777 0.777
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.777 0.777
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.759 0.759
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.759 0.759
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.759 0.759
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.759 0.759
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.759 0.759
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.759 0.759
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.759 0.759
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.759 0.759
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.759 0.759
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.759 0.759
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra005902.1-P TBP 23 105
Bra005902.1-P TBP 113 202

Links

Other TBP family TFs
Other Brassica rapa TFs

713 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000009592 Ailuropoda melanoleuca ENSAMEG00000009592 I
ENSAMEG00000011612 Ailuropoda melanoleuca ENSAMEG00000011612 I
Alligator_sinensis_CCG009102.1 Alligator sinensis Alligator_sinensis_CCG009102.1 I
Alligator_sinensis_CCG011017.1 Alligator sinensis Alligator_sinensis_CCG011017.1 I
Aqu1.218726 Amphimedon queenslandica Aqu1.218726 I
ENSAPLG00000003195 Anas platyrhynchos ENSAPLG00000003195 I
ENSAPLG00000007121 Anas platyrhynchos ENSAPLG00000007121 I
HEY2 Anolis carolinensis ENSACAG00000001813 I
Afo_R005157 Aptenodytes forsteri Afo_R005157 I
Afo_R005555 Aptenodytes forsteri Afo_R005555 I
ENSAMXG00000011237 Astyanax mexicanus ENSAMXG00000011237 I
ENSAMXG00000018013 Astyanax mexicanus ENSAMXG00000018013 I
ENSP00000357348-D1 Bos grunniens ENSP00000357348-D1 I
ENSP00000361943-D1 Bos grunniens ENSP00000361943-D1 I
HEY2 Bos taurus ENSBTAG00000000919 I
HEYL Bos taurus ENSBTAG00000008688 I
HEY1 Bos taurus ENSBTAG00000015717 I
estExt_GenewiseH_1.C_4620016 Branchiostoma floridae estExt_GenewiseH_1.C_4620016 I
Brh_R005579 Buceros rhinoceros Brh_R005579 I
Brh_R011837 Buceros rhinoceros Brh_R011837 I
HEY1 Callithrix jacchus ENSCJAG00000000477 I
HEY2 Callithrix jacchus ENSCJAG00000003761 I
Aan_R009606 Calypte anna Aan_R009606 I
PABPC4 Canis familiaris ENSCAFG00000003081 I
HEY1 Canis familiaris ENSCAFG00000008391 I
ENSCAFG00000032212 Canis familiaris ENSCAFG00000032212 I
CapteG182542 Capitella teleta CapteG182542 I
CapteG228069 Capitella teleta CapteG228069 I
ENSCPOG00000000704 Cavia porcellus ENSCPOG00000000704 I
HEY1 Cavia porcellus ENSCPOG00000008527 I
HEY2 Cavia porcellus ENSCPOG00000021417 I
Cmyd_10005434 Chelonia mydas Cmyd_10005434 I
Cmyd_10006677 Chelonia mydas Cmyd_10006677 I
ENSCSAG00000001134 Chlorocebus sabaeus ENSCSAG00000001134 I
ENSCSAG00000013410 Chlorocebus sabaeus ENSCSAG00000013410 I
ENSCSAG00000016312 Chlorocebus sabaeus ENSCSAG00000016312 I
CGI_10018323 Crassostrea gigas CGI_10018323 I
hey2 Danio rerio ENSDARG00000013441 I
heyl Danio rerio ENSDARG00000055798 I
hey1 Danio rerio ENSDARG00000070538 I
DAPPUDRAFT_347250 Daphnia pulex DAPPUDRAFT_347250 N
HEYL Dasypus novemcinctus ENSDNOG00000010392 I
HEY1 Dasypus novemcinctus ENSDNOG00000031981 I
HEY2 Dasypus novemcinctus ENSDNOG00000044967 I
YQE_09192 Dendroctonus ponderosae YQE_09192 I
ENSDORG00000009001 Dipodomys ordii ENSDORG00000009001 I
HEY2 Echinops telfairi ENSETEG00000007340 I
HEYL Equus caballus ENSECAG00000007220 I
HEY2 Equus caballus ENSECAG00000014094 I
HEY1 Equus caballus ENSECAG00000017010 I
HEY2 Erinaceus europaeus ENSEEUG00000014040 I
HEYL Felis catus ENSFCAG00000010963 I
HEY1 Felis catus ENSFCAG00000025542 I
HEY2 Felis catus ENSFCAG00000026914 I
ENSFALG00000000542 Ficedula albicollis ENSFALG00000000542 I
ENSFALG00000008605 Ficedula albicollis ENSFALG00000008605 I
ENSFALG00000011461 Ficedula albicollis ENSFALG00000011461 I
ENSGMOG00000011084 Gadus morhua ENSGMOG00000011084 I
ENSGMOG00000013488 Gadus morhua ENSGMOG00000013488 I
ENSGMOG00000017811 Gadus morhua ENSGMOG00000017811 I
ENSGALG00000021593 Gallus gallus ENSGALG00000021593 I
hey1 Gasterosteus aculeatus ENSGACG00000003436 I
heyl Gasterosteus aculeatus ENSGACG00000007492 I
HEY1 Gasterosteus aculeatus ENSGACG00000008712 I
Gfo_R007552 Geospiza fortis Gfo_R007552 I
Gfo_R016187 Geospiza fortis Gfo_R016187 I
HEYL Gorilla gorilla ENSGGOG00000008268 I
HEY1 Gorilla gorilla ENSGGOG00000009960 I
HEY2 Homo sapiens ENSG00000135547 D
HEYL Homo sapiens ENSG00000163909 I
HEY1 Homo sapiens ENSG00000164683 D
ENSSTOG00000022371 Ictidomys tridecemlineatus ENSSTOG00000022371 I
ENSSTOG00000023191 Ictidomys tridecemlineatus ENSSTOG00000023191 I
ISCW011251 Ixodes scapularis ISCW011251 I
ENSLACG00000006098 Latimeria chalumnae ENSLACG00000006098 I
ENSLACG00000012215 Latimeria chalumnae ENSLACG00000012215 I
ENSLACG00000015540 Latimeria chalumnae ENSLACG00000015540 I
ENSLOCG00000001853 Lepisosteus oculatus ENSLOCG00000001853 I
ENSLOCG00000017268 Lepisosteus oculatus ENSLOCG00000017268 I
LDEC001043 Leptinotarsa decemlineata LDEC001043 I
LotgiG171867 Lottia gigantea LotgiG171867 I
HEY1 Loxodonta africana ENSLAFG00000011488 I
HEY2 Loxodonta africana ENSLAFG00000014208 I
HEYL Loxodonta africana ENSLAFG00000027563 I
ENSP00000338272 Macaca fascicularis ENSP00000338272 I
ENSP00000357348 Macaca fascicularis ENSP00000357348 I
ENSP00000361943 Macaca fascicularis ENSP00000361943 I
HEY1 Macaca mulatta ENSMMUG00000002740 I
HEY2 Macaca mulatta ENSMMUG00000009491 I
HEYL Macaca mulatta ENSMMUG00000018861 I
ENSMEUG00000007444 Macropus eugenii ENSMEUG00000007444 I
HEY2 Meleagris gallopavo ENSMGAG00000013281 I
HEY1 Monodelphis domestica ENSMODG00000006648 I
HEY2 Monodelphis domestica ENSMODG00000017701 I
ENSMPUG00000001859 Mustela putorius furo ENSMPUG00000001859 I
ENSMPUG00000014412 Mustela putorius furo ENSMPUG00000014412 I
ENSMPUG00000014531 Mustela putorius furo ENSMPUG00000014531 I
Hey2 Mus musculus ENSMUSG00000019789 D
Heyl Mus musculus ENSMUSG00000032744 I
Hey1 Mus musculus ENSMUSG00000040289 I
Myotis_brandtii_HEY1_10021379 Myotis brandtii Myotis_brandtii_HEY1_10021379 I
Myotis_brandtii_hey2_10035635 Myotis brandtii Myotis_brandtii_hey2_10035635 I
HEY2 Myotis lucifugus ENSMLUG00000002617 I
HEYL Myotis lucifugus ENSMLUG00000029490 I
ENSNLEG00000002239 Nomascus leucogenys ENSNLEG00000002239 I
ENSNLEG00000013972 Nomascus leucogenys ENSNLEG00000013972 I
Ocbimv22039104m.g Octopus bimaculoides Ocbimv22039104m.g I
Ogr14041 Ophisaurus gracilis Ogr14041 I
Ogr15033 Ophisaurus gracilis Ogr15033 I
ENSONIG00000003087 Oreochromis niloticus ENSONIG00000003087 I
ENSONIG00000004726 Oreochromis niloticus ENSONIG00000004726 I
HEYL Ornithorhynchus anatinus ENSOANG00000010000 I
ENSOANG00000022119 Ornithorhynchus anatinus ENSOANG00000022119 I
HEYL Oryctolagus cuniculus ENSOCUG00000000560 I
HEY1 Oryzias latipes ENSORLG00000008268 I
heyl Oryzias latipes ENSORLG00000013651 I
HEY1 Otolemur garnettii ENSOGAG00000007210 I
HEY2 Otolemur garnettii ENSOGAG00000027812 I
HEYL Otolemur garnettii ENSOGAG00000030877 I
ENSOARG00000007915 Ovis aries ENSOARG00000007915 I
ENSOARG00000008063 Ovis aries ENSOARG00000008063 I
ENSOARG00000020088 Ovis aries ENSOARG00000020088 I
HEYL Pan troglodytes ENSPTRG00000000574 I
HEY2 Pan troglodytes ENSPTRG00000018574 I
HEY1 Pan troglodytes ENSPTRG00000020364 I
ENSPANG00000006227 Papio anubis ENSPANG00000006227 I
ENSPANG00000018687 Papio anubis ENSPANG00000018687 I
PHUM454530 Pediculus humanus PHUM454530 I
ENSPSIG00000003791 Pelodiscus sinensis ENSPSIG00000003791 I
ENSPSIG00000012495 Pelodiscus sinensis ENSPSIG00000012495 I
ENSPFOG00000001913 Poecilia formosa ENSPFOG00000001913 I
ENSPFOG00000015536 Poecilia formosa ENSPFOG00000015536 I
Pvit_00065 Pogona vitticeps Pvit_00065 I
Pvit_01735 Pogona vitticeps Pvit_01735 I
ENSPPYG00000001505 Pongo abelii ENSPPYG00000001505 I
ENSPPYG00000016987 Pongo abelii ENSPPYG00000016987 I
ENSPPYG00000018693 Pongo abelii ENSPPYG00000018693 I
Hey1 Rattus norvegicus ENSRNOG00000011593 I
Hey2 Rattus norvegicus ENSRNOG00000013364 I
Heyl Rattus norvegicus ENSRNOG00000015318 I
Sakowv30023592m.g Saccoglossus kowalevskii Sakowv30023592m.g I
ENSSHAG00000016487 Sarcophilus harrisii ENSSHAG00000016487 I
ENSSHAG00000017958 Sarcophilus harrisii ENSSHAG00000017958 I
ENSSHAG00000018213 Sarcophilus harrisii ENSSHAG00000018213 I
HEY2 Sorex araneus ENSSARG00000011755 I
SMAR012977 Strigamia maritima SMAR012977 N
HEY2 Sus scrofa ENSSSCG00000004223 I
HEY1 Sus scrofa ENSSSCG00000006159 I
ENSSSCG00000024651 Sus scrofa ENSSSCG00000024651 I
HEY2 Taeniopygia guttata ENSTGUG00000011792 I
heyl Takifugu rubripes ENSTRUG00000003399 I
HEY1 Takifugu rubripes ENSTRUG00000013573 I
hey1 Takifugu rubripes ENSTRUG00000014561 I
tetur01g03020 Tetranychus urticae tetur01g03020 I
heyl Tetraodon nigroviridis ENSTNIG00000009228 I
hey1 Tetraodon nigroviridis ENSTNIG00000017785 I
HEY1 Tetraodon nigroviridis ENSTNIG00000018401 I
TC001593 Tribolium castaneum TC001593 I
HEY2 Tupaia belangeri ENSTBEG00000008836 I
HEYL Tursiops truncatus ENSTTRG00000014353 I
HEY2 Vicugna pacos ENSVPAG00000010498 I
hey1.S Xenopus laevis XB-GENE-865637 I
hey2 Xenopus tropicalis XB-GENE-485923 I
hey1 Xenopus tropicalis XB-GENE-486694 I
ENSXMAG00000006950 Xiphophorus maculatus ENSXMAG00000006950 I
ENSXMAG00000014241 Xiphophorus maculatus ENSXMAG00000014241 I
L798_14068 Zootermopsis nevadensis L798_14068 I