maker-nMf.1.1.scaf22650-augustus-gene-0.3 (Meloidogyne floridensis)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 maker-nMf.1.1.scaf22650-augustus-gene-0.3 T343545_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.780 0.780
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.780 0.780
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.780 0.780
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.780 0.780
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.780 0.780
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.780 0.780
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.780 0.780
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.780 0.780
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.780 0.780
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.780 0.780
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
maker-nMf.1.1.scaf22650-augustus-gene-0.3-mRNA-1 TBP 20 100
maker-nMf.1.1.scaf22650-augustus-gene-0.3-mRNA-1 TBP 108 137

Links

Other TBP family TFs
Other Meloidogyne floridensis TFs

441 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HelroG148606 Helobdella robusta HelroG148606 N
HelroG148611 Helobdella robusta HelroG148611 N
HelroG91177 Helobdella robusta HelroG91177 N
HelroG91189 Helobdella robusta HelroG91189 N
HelroG91790 Helobdella robusta HelroG91790 N
HelroG92220 Helobdella robusta HelroG92220 N
HelroG92666 Helobdella robusta HelroG92666 N