CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

OGLUM01G10550 *(Oryza glumaepatula)* TCP
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03634 (TCP)	IPR005333	OGLUM01G10550	T344080_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
AT-TCP20 M02507_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9229	0.893	0.494
TCP20 M02502_2.00	Arabidopsis thaliana	GGSCCCACNN	NNGTGGGSCC	PBM Weirauch et al.(2014) pTH8159	0.885	0.468
TCP20 M07285_2.00	Arabidopsis thaliana	NNNNNNNNNNGTGGGRCCCAC	GTGGGYCCCACNNNNNNNNNN	Dap-seq OMalley et al.(2016) TCP20_col_a	0.885	0.468
TCP20 M07286_2.00	Arabidopsis thaliana	RTGGGDCCCACH	DGTGGGHCCCAY	Dap-seq OMalley et al.(2016) TCP20_colamp_a	0.885	0.468
TCP20 M11397_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP20_01	0.885	0.468
cassava45561.m1 M02516_2.00	Manihot esculenta	KGGVCCCACH	DGTGGGBCCM	PBM Weirauch et al.(2014) pTH9207	0.881	0.481
GLYMA19G26560 M02511_2.00	Glycine max	BGGBCCCAC	GTGGGVCCV	PBM Weirauch et al.(2014) pTH9184	0.879	0.494
PCF2 M11399_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PCF2_01	0.878	0.456
PK13314.1 M01316_2.00	Cannabis sativa	NNGGNCCCAC	GTGGGNCCNN	PBM Lambert et al.(2019) pTH11330	0.871	0.468
PK14653.1 M01317_2.00	Cannabis sativa	BGGSCCCAC	GTGGGSCCV	PBM Lambert et al.(2019) pTH11324	0.870	0.456
PK14653.1 M02517_2.00	Cannabis sativa	BTGGGCCCAV	BTGGGCCCAV	PBM Weirauch et al.(2014) pTH9586	0.870	0.456
TCP22 M07279_2.00	Arabidopsis thaliana	RTRGGNCCCACHN	NDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g72010_colamp_a	0.863	0.468
TCP22 M07280_2.00	Arabidopsis thaliana	RTGGGDCCCACNN	NNGTGGGHCCCAY	Dap-seq OMalley et al.(2016) At1g72010_col	0.863	0.468
LjSGA_053525.1 M02518_2.00	Lotus japonicus	GGNCCCAC	GTGGGNCC	PBM Weirauch et al.(2014) pTH9201	0.862	0.430
TCP9 M01086_2.00	Arabidopsis thaliana	NNGGGCCCACN	NGTGGGCCCNN	PBM Sullivan et al.(2014) pTH9796	0.861	0.456
TCP9 M07281_2.00	Arabidopsis thaliana	RTGGGDCCCAC	GTGGGHCCCAY	Dap-seq OMalley et al.(2016) At2g45680_colamp_a	0.861	0.456
TCP9 M07282_2.00	Arabidopsis thaliana	DGTGGGRCCCACDDNDNDNBN	NVNHNHNHHGTGGGYCCCACH	Dap-seq OMalley et al.(2016) At2g45680_col_b	0.861	0.456
TCP8 M01311_2.00	Arabidopsis thaliana	NGGNMCCAC	GTGGKNCCN	PBM Lambert et al.(2019) pTH11569	0.860	0.494
VIT_15s0048g01150 M02515_2.00	Vitis vinifera	NNGGNCCCAC	GTGGGNCCNN	PBM Weirauch et al.(2014) pTH9294	0.857	0.443
TCP19 M02504_2.00	Arabidopsis thaliana	NNGGVCCCAC	GTGGGBCCNN	PBM Weirauch et al.(2014) pTH7452	0.856	0.418
PK12736.1 M01315_2.00	Cannabis sativa	NRRSCMYAYNNNNN	NNNNNRTRKGSYYN	PBM Lambert et al.(2019) pTH10121	0.849	0.468
TCP14 M07289_2.00	Arabidopsis thaliana	AVADAKVDBGTGGGDCCCAC	GTGGGHCCCACVHBMTHTBT	Dap-seq OMalley et al.(2016) TCP14_col_b	0.849	0.456
TCP23 M00891_2.00	Arabidopsis thaliana	NNGGKCCCAC	GTGGGMCCNN	PBM Franco-Zorrilla et al.(2014) TCP23	0.847	0.443
TCP15 M00892_2.00	Arabidopsis thaliana	NNGGNCCCAC	GTGGGNCCNN	PBM Franco-Zorrilla et al.(2014) TCP15	0.847	0.443
TCP15 M07277_2.00	Arabidopsis thaliana	RTRGGDCCCACHH	DDGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At1g69690_col_a	0.847	0.443
TCP15 M07278_2.00	Arabidopsis thaliana	RTRGGNCCCACHW	WDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g69690_colamp_a	0.847	0.443
TCP15 M11394_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP15_01	0.847	0.443
fgenesh2_kg.8__1074__AT5G51910.2 M02509_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9232	0.843	0.418
TCP21 M07292_2.00	Arabidopsis thaliana	NNRTGGGDCCCACN	NGTGGGHCCCAYNN	Dap-seq OMalley et al.(2016) At5g08330_col_a	0.832	0.405
TCP21 M07293_2.00	Arabidopsis thaliana	RTRGGDCCCACH	DGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At5g08330_colamp_a	0.832	0.405
OS02G0635800 M02512_2.00	Oryza sativa	NBGGGCCCVN	NBGGGCCCVN	PBM Weirauch et al.(2014) pTH8856	0.832	0.405
TCP7 M07294_2.00	Arabidopsis thaliana	RTGGGNCCCAC	GTGGGNCCCAY	Dap-seq OMalley et al.(2016) TCP7_col_a	0.828	0.392
OsI_08196 M02513_2.00	Oryza sativa	GGGCCCAC	GTGGGCCC	PBM Weirauch et al.(2014) pTH9274	0.824	0.405
For this family, TFs with SR scores > 0.822* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
OGLUM01G10550.1	TCP	1	130	MPALCVAWIFQLTRDLGHKSDGETVQWLLQQAELAIVATTGTGTIPVGGADRQQEDALPAEQIDAVAGEPSPCGRRGRRSSPLRRVPASSGGPHTSHASGPSPGRALFGEREGGGERRVVEERKNRNATY

Links
Other TCP family TFs
Other *Oryza glumaepatula* TFs

574 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AAEL011092	Aedes aegypti	AAEL011092	N
ENSAMEG00000012088	Ailuropoda melanoleuca	ENSAMEG00000012088	N
Alligator_sinensis_CCG006007.1	Alligator sinensis	Alligator_sinensis_CCG006007.1	N
Aqu1.222503	Amphimedon queenslandica	Aqu1.222503	N
ENSAPLG00000007715	Anas platyrhynchos	ENSAPLG00000007715	N
KDM5B	Anolis carolinensis	ENSACAG00000005107	N
AALB003225	Anopheles albimanus	AALB003225	N
AARA006109	Anopheles arabiensis	AARA006109	N
AATE009040	Anopheles atroparvus	AATE009040	N
ACHR007377	Anopheles christyi	ACHR007377	N
ACOM038290	Anopheles coluzzii	ACOM038290	N
ACUA025224	Anopheles culicifacies	ACUA025224	N
ADAC004659	Anopheles darlingi	ADAC004659	N
ADIR009258	Anopheles dirus	ADIR009258	N
AEPI000432	Anopheles epiroticus	AEPI000432	N
AFAF009884	Anopheles farauti	AFAF009884	N
AFUN008496	Anopheles funestus	AFUN008496	N
AGAP004854	Anopheles gambiae	AGAP004854	N
AMAM014474	Anopheles maculatus	AMAM014474	N
AMEC004492	Anopheles melas	AMEC004492	N
AMEM014063	Anopheles merus	AMEM014063	N
AMIN011637	Anopheles minimus	AMIN011637	N
AQUA000338	Anopheles quadriannulatus	AQUA000338	N
ASTEI05939	Anopheles stephensi	ASTEI05939	N
GB52426	Apis mellifera	GB52426	N
Afo_R005441	Aptenodytes forsteri	Afo_R005441	N
ENSAMXG00000018648	Astyanax mexicanus	ENSAMXG00000018648	N
ENSAMXG00000024732	Astyanax mexicanus	ENSAMXG00000024732	N
ACEP21606	Atta cephalotes	ACEP21606	N
BGIBMGA004558	Bombyx mori	BGIBMGA004558	N
ENSP00000356233-D1	Bos grunniens	ENSP00000356233-D1	N
KDM5B	Bos taurus	ENSBTAG00000006175	N
Brh_R004837	Buceros rhinoceros	Brh_R004837	N
KDM5B	Callithrix jacchus	ENSCJAG00000006050	N
Aan_R003738	Calypte anna	Aan_R003738	N
Cflo_12071--XP_001122635.1_APIME	Camponotus floridanus	Cflo_12071--XP_001122635.1_APIME	N
KDM5B	Canis familiaris	ENSCAFG00000010452	N
CapteG147496	Capitella teleta	CapteG147496	N
KDM5B	Cavia porcellus	ENSCPOG00000010644	N
Cmyd_10020716	Chelonia mydas	Cmyd_10020716	N
ENSCSAG00000014155	Chlorocebus sabaeus	ENSCSAG00000014155	N
KDM5B	Choloepus hoffmanni	ENSCHOG00000012197	N
CLEC002198	Cimex lectularius	CLEC002198	N
CLEC007177	Cimex lectularius	CLEC007177	N
CGI_10007771	Crassostrea gigas	CGI_10007771	N
CpipJ_CPIJ009184	Culex pipiens	CpipJ_CPIJ009184	N
CPIJ009184	Culex quinquefasciatus	CPIJ009184	N
KGM_20601	Danaus plexippus	KGM_20601	N
kdm5bb	Danio rerio	ENSDARG00000003098	N
kdm5ba	Danio rerio	ENSDARG00000057093	N
KDM5B	Dasypus novemcinctus	ENSDNOG00000003205	N
ECANG7_00151	Echinococcus canadensis	ECANG7_00151	N
KDM5B	Echinops telfairi	ENSETEG00000018113	N
KDM5B	Equus caballus	ENSECAG00000014268	N
KDM5B	Felis catus	ENSFCAG00000013102	N
ENSFALG00000002622	Ficedula albicollis	ENSFALG00000002622	N
ENSGMOG00000001476	Gadus morhua	ENSGMOG00000001476	N
ENSGMOG00000019538	Gadus morhua	ENSGMOG00000019538	N
ENSGMOG00000019547	Gadus morhua	ENSGMOG00000019547	N
ENSGALG00000000427	Gallus gallus	ENSGALG00000000427	N
kdm5ba	Gasterosteus aculeatus	ENSGACG00000000508	N
kdm5bb	Gasterosteus aculeatus	ENSGACG00000011868	N
KDM5B	Gorilla gorilla	ENSGGOG00000003073	N
HMEL015554	Heliconius melpomene	HMEL015554	N
KDM5B	Homo sapiens	ENSG00000117139	N
ENSSTOG00000000372	Ictidomys tridecemlineatus	ENSSTOG00000000372	N
ENSLACG00000012136	Latimeria chalumnae	ENSLACG00000012136	N
ENSLOCG00000010123	Lepisosteus oculatus	ENSLOCG00000010123	N
LotgiG205701	Lottia gigantea	LotgiG205701	N
KDM5B	Loxodonta africana	ENSLAFG00000005104	N
LLOJ009523	Lutzomyia longipalpis	LLOJ009523	N
ENSP00000356233	Macaca fascicularis	ENSP00000356233	N
KDM5B	Macaca mulatta	ENSMMUG00000015233	N
ENSMEUG00000014994	Macropus eugenii	ENSMEUG00000014994	N
KDM5B	Meleagris gallopavo	ENSMGAG00000001393	N
MCINX012993	Melitaea cinxia	MCINX012993	N
KDM5B	Microcebus murinus	ENSMICG00000006046	N
KDM5B	Monodelphis domestica	ENSMODG00000000755	N
ENSMPUG00000011183	Mustela putorius furo	ENSMPUG00000011183	N
Kdm5b	Mus musculus	ENSMUSG00000042207	N
Kdm5d	Mus musculus	ENSMUSG00000056673	N
Myotis_brandtii_KDM5B_10008160	Myotis brandtii	Myotis_brandtii_KDM5B_10008160	N
Myotis_brandtii_KDM5B_10012819	Myotis brandtii	Myotis_brandtii_KDM5B_10012819	N
ENSMLUG00000015035	Myotis lucifugus	ENSMLUG00000015035	N
ENSMLUG00000024285	Myotis lucifugus	ENSMLUG00000024285	N
NV16665	Nasonia vitripennis	NV16665	N
ENSNLEG00000018101	Nomascus leucogenys	ENSNLEG00000018101	N
Ogr08783	Ophisaurus gracilis	Ogr08783	N
ENSONIG00000016770	Oreochromis niloticus	ENSONIG00000016770	N
ENSONIG00000019223	Oreochromis niloticus	ENSONIG00000019223	N
KDM5B	Ornithorhynchus anatinus	ENSOANG00000002512	N
KDM5B	Oryctolagus cuniculus	ENSOCUG00000008003	N
kdm5ba	Oryzias latipes	ENSORLG00000014767	N
kdm5bb	Oryzias latipes	ENSORLG00000014990	N
ENSOARG00000018421	Ovis aries	ENSOARG00000018421	N
KDM5B	Pan troglodytes	ENSPTRG00000001856	N
ENSPTRG00000021925	Pan troglodytes	ENSPTRG00000021925	N
ENSPANG00000014633	Papio anubis	ENSPANG00000014633	N
ENSPMAG00000003030	Petromyzon marinus	ENSPMAG00000003030	N
ENSPFOG00000006840	Poecilia formosa	ENSPFOG00000006840	N
ENSPFOG00000015221	Poecilia formosa	ENSPFOG00000015221	N
ENSPPYG00000000346	Pongo abelii	ENSPPYG00000000346	N
KDM5B	Pteropus vampyrus	ENSPVAG00000011030	N
Kdm5c	Rattus norvegicus	ENSRNOG00000057706	N
Kdm5b	Rattus norvegicus	ENSRNOG00000060544	N
RPRC012847	Rhodnius prolixus	RPRC012847	N
Sakowv30029063m.g	Saccoglossus kowalevskii	Sakowv30029063m.g	N
ENSSHAG00000000588	Sarcophilus harrisii	ENSSHAG00000000588	N
ENSSHAG00000015215	Sarcophilus harrisii	ENSSHAG00000015215	N
KDM5C	Sorex araneus	ENSSARG00000000542	N
KDM5B	Sorex araneus	ENSSARG00000012265	N
SMAR004279	Strigamia maritima	SMAR004279	N
KDM5B	Sus scrofa	ENSSSCG00000010928	N
KDM5B	Taeniopygia guttata	ENSTGUG00000001257	N
kdm5ba	Takifugu rubripes	ENSTRUG00000013308	N
tetur02g05990	Tetranychus urticae	tetur02g05990	N
kdm5ba	Tetraodon nigroviridis	ENSTNIG00000007074	N
fgeneshTM_pg.7_#_246	Tremella mesenterica	fgeneshTM_pg.7_#_246	N
KDM5B	Tupaia belangeri	ENSTBEG00000006521	N
KDM5B	Tursiops truncatus	ENSTTRG00000001078	N
Tal_R003404	Tyto alba	Tal_R003404	N
KDM5B	Vicugna pacos	ENSVPAG00000006056	N
kdm5b	Xenopus tropicalis	XB-GENE-856240	N
ENSXMAG00000003378	Xiphophorus maculatus	ENSXMAG00000003378	N
ENSXMAG00000011463	Xiphophorus maculatus	ENSXMAG00000011463	N

OGLUM01G10550 (Oryza glumaepatula) TCP

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

574 Related TFs

OGLUM01G10550 **(Oryza glumaepatula)
TCP**