PGSC0003DMG400026626 (Solanum tuberosum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 PGSC0003DMG400026626 T344273_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.905 0.331
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.902 0.325
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.899 0.325
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.899 0.325
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.899 0.325
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.898 0.331
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.854 0.312
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.842 0.312
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.842 0.312
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.827 0.261
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.827 0.261
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400068477 TCP 101 449
PGSC0003DMT400068478 TCP 101 418

Links

Other TCP family TFs
Other Solanum tuberosum TFs

319 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_30558 Aegilops tauschii F775_30558 N
Eucgr.C01587 Eucalyptus grandis Eucgr.C01587 N
Eucgr.C01586 Eucalyptus grandis Eucgr.C01586 N
MLOC_19108 Hordeum vulgare MLOC_19108 N
LPERR02G17380 Leersia perrieri LPERR02G17380 N
OBART02G21440 Oryza barthii OBART02G21440 N
OB02G28900 Oryza brachyantha OB02G28900 N
ORGLA02G0184700 Oryza glaberrima ORGLA02G0184700 N
OGLUM02G21630 Oryza glumaepatula OGLUM02G21630 N
BGIOSGA006205 Oryza indica BGIOSGA006205 N
OLONG_009376 Oryza longistaminata OLONG_009376 N
OMERI02G21010 Oryza meridionalis OMERI02G21010 N
ONIVA02G23610 Oryza nivara ONIVA02G23610 N
OPUNC02G19290 Oryza punctata OPUNC02G19290 N
ORUFI02G22530 Oryza rufipogon ORUFI02G22530 N
OS02G0572900 Oryza sativa OS02G0572900 N
Pavir.J32778 Panicum virgatum Pavir.J32778 N
Pavir.J13034 Panicum virgatum Pavir.J13034 N
Solyc04g056320.1 Solanum lycopersicum Solyc04g056320.1 N
PGSC0003DMG400003459 Solanum tuberosum PGSC0003DMG400003459 N
Sb04g023670 Sorghum bicolor Sb04g023670 N
Traes_6AL_393A90DDD Triticum aestivum Traes_6AL_393A90DDD N
Traes_6DL_3B9E63F04 Triticum aestivum Traes_6DL_3B9E63F04 N
VIT_07s0141g00020 Vitis vinifera VIT_07s0141g00020 N
GRMZM2G023988 Zea mays GRMZM2G023988 N