Solyc08g048370.2 (Solanum lycopersicum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 Solyc08g048370.2 T344422_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.938 0.585
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.932 0.570
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.932 0.570
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.909 0.359
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.889 0.380
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.885 0.345
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.876 0.345
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.873 0.338
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.870 0.338
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.870 0.338
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.870 0.338
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.865 0.352
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.865 0.352
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.846 0.303
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.845 0.324
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.845 0.324
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc08g048370.2.1 TCP 42 183

Links

Other TCP family TFs
Other Solanum lycopersicum TFs

432 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI4G06567 Brachypodium distachyon BRADI4G06567 N 0.000
BRADI4G12615 Brachypodium distachyon BRADI4G12615 N 0.000
Ca_05643 Cicer arietinum Ca_05643 N 0.000
gene12191-v1.0-hybrid Fragaria vesca gene12191-v1.0-hybrid N 0.000
chr5.CM0200.500.nc Lotus japonicus chr5.CM0200.500.nc N 0.000
chr5.CM0200.490.nc Lotus japonicus chr5.CM0200.490.nc N 0.000
MTR_1g106470 Medicago truncatula MTR_1g106470 N 0.000
OBART11G20580 Oryza barthii OBART11G20580 N 0.000
OBART12G13380 Oryza barthii OBART12G13380 N 0.000
OB11G25500 Oryza brachyantha OB11G25500 N 0.000
ORGLA12G0196200 Oryza glaberrima ORGLA12G0196200 N 0.000
ORGLA11G0169400 Oryza glaberrima ORGLA11G0169400 N 0.000
OGLUM11G20000 Oryza glumaepatula OGLUM11G20000 N 0.000
OGLUM12G15010 Oryza glumaepatula OGLUM12G15010 N 0.000
BGIOSGA035596 Oryza indica BGIOSGA035596 N 0.000
OLONG_021754 Oryza longistaminata OLONG_021754 N 0.000
OLONG_028675 Oryza longistaminata OLONG_028675 N 0.000
ONIVA11G20620 Oryza nivara ONIVA11G20620 N 0.000
OPUNC11G17200 Oryza punctata OPUNC11G17200 N 0.000
OPUNC12G12060 Oryza punctata OPUNC12G12060 N 0.000
ORUFI11G22390 Oryza rufipogon ORUFI11G22390 N 0.000
ORUFI12G14590 Oryza rufipogon ORUFI12G14590 N 0.000
OS11G0634700 Oryza sativa OS11G0634700 N 0.000
Pavir.Hb00249 Panicum virgatum Pavir.Hb00249 N 0.000
Pavir.Ha00126 Panicum virgatum Pavir.Ha00126 N 0.000
Pavir.Cb00430 Panicum virgatum Pavir.Cb00430 N 0.000
Pavir.Ca02532 Panicum virgatum Pavir.Ca02532 N 0.000
Pavir.Ca02388 Panicum virgatum Pavir.Ca02388 N 0.000
Pavir.Ia01481 Panicum virgatum Pavir.Ia01481 N 0.000
Pavir.Ib03951 Panicum virgatum Pavir.Ib03951 N 0.000
Si038695m.g Setaria italica Si038695m.g N 0.000
Si028242m.g Setaria italica Si028242m.g N 0.000
Si024550m.g Setaria italica Si024550m.g N 0.000
Si022813m.g Setaria italica Si022813m.g N 0.000
Solyc10g049720.1 Solanum lycopersicum Solyc10g049720.1 N 0.000
Sb08g019780 Sorghum bicolor Sb08g019780 N 0.000
Sb01g014580 Sorghum bicolor Sb01g014580 N 0.000
TRAES3BF169000100CFD_g Triticum aestivum TRAES3BF169000100CFD_g N 0.000
Traes_3DL_801E89185 Triticum aestivum Traes_3DL_801E89185 N 0.000
TRIUR3_10349 Triticum urartu TRIUR3_10349 N 0.000
GRMZM2G165188 Zea mays GRMZM2G165188 N 0.000
AC198518.3_FG005 Zea mays AC198518.3_FG005 N 0.000