Bostr.10273s0152 (Boechera stricta)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Bostr.10273s0152 T344702_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP22
M07279_2.00 		Arabidopsis thaliana
RTRGGNCCCACHN
NDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g72010_colamp_a 		0.973 0.656
TCP22
M07280_2.00 		Arabidopsis thaliana
RTGGGDCCCACNN
NNGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At1g72010_col 		0.973 0.656
TCP23
M00891_2.00 		Arabidopsis thaliana
NNGGKCCCAC
GTGGGMCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP23 		0.967 0.632
TCP8
M01311_2.00 		Arabidopsis thaliana
NGGNMCCAC
GTGGKNCCN		 PBM
Lambert et al.(2019)
pTH11569 		0.960 0.576
PK12736.1
M01315_2.00 		Cannabis sativa
NRRSCMYAYNNNNN
NNNNNRTRKGSYYN		 PBM
Lambert et al.(2019)
pTH10121 		0.959 0.584
TCP14
M07289_2.00 		Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC
GTGGGHCCCACVHBMTHTBT		 Dap-seq
OMalley et al.(2016)
TCP14_col_b 		0.957 0.560
TCP15
M00892_2.00 		Arabidopsis thaliana
NNGGNCCCAC
GTGGGNCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP15 		0.955 0.584
TCP15
M07277_2.00 		Arabidopsis thaliana
RTRGGDCCCACHH
DDGTGGGHCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_col_a 		0.955 0.584
TCP15
M07278_2.00 		Arabidopsis thaliana
RTRGGNCCCACHW
WDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_colamp_a 		0.955 0.584
TCP15
M11394_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP15_01 		0.955 0.584
TCP21
M07292_2.00 		Arabidopsis thaliana
NNRTGGGDCCCACN
NGTGGGHCCCAYNN		 Dap-seq
OMalley et al.(2016)
At5g08330_col_a 		0.954 0.496
TCP21
M07293_2.00 		Arabidopsis thaliana
RTRGGDCCCACH
DGTGGGHCCYAY		 Dap-seq
OMalley et al.(2016)
At5g08330_colamp_a 		0.954 0.496
TCP7
M07294_2.00 		Arabidopsis thaliana
RTGGGNCCCAC
GTGGGNCCCAY		 Dap-seq
OMalley et al.(2016)
TCP7_col_a 		0.952 0.504
fgenesh2_kg.8__1074__AT5G51910.2
M02509_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9232 		0.946 0.496
PCF2
M11399_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF2_01 		0.944 0.456
TCP19
M02504_2.00 		Arabidopsis thaliana
NNGGVCCCAC
GTGGGBCCNN		 PBM
Weirauch et al.(2014)
pTH7452 		0.943 0.464
PK13314.1
M01316_2.00 		Cannabis sativa
NNGGNCCCAC
GTGGGNCCNN		 PBM
Lambert et al.(2019)
pTH11330 		0.940 0.464
TCP9
M01086_2.00 		Arabidopsis thaliana
NNGGGCCCACN
NGTGGGCCCNN		 PBM
Sullivan et al.(2014)
pTH9796 		0.939 0.488
TCP9
M07281_2.00 		Arabidopsis thaliana
RTGGGDCCCAC
GTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At2g45680_colamp_a 		0.939 0.488
TCP9
M07282_2.00 		Arabidopsis thaliana
DGTGGGRCCCACDDNDNDNBN
NVNHNHNHHGTGGGYCCCACH		 Dap-seq
OMalley et al.(2016)
At2g45680_col_b 		0.939 0.488
AT-TCP20
M02507_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9229 		0.938 0.464
TCP20
M02502_2.00 		Arabidopsis thaliana
GGSCCCACNN
NNGTGGGSCC		 PBM
Weirauch et al.(2014)
pTH8159 		0.938 0.448
TCP20
M07285_2.00 		Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC
GTGGGYCCCACNNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
TCP20_col_a 		0.938 0.448
TCP20
M07286_2.00 		Arabidopsis thaliana
RTGGGDCCCACH
DGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
TCP20_colamp_a 		0.938 0.448
TCP20
M11397_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP20_01 		0.938 0.448
GLYMA19G26560
M02511_2.00 		Glycine max
BGGBCCCAC
GTGGGVCCV		 PBM
Weirauch et al.(2014)
pTH9184 		0.938 0.488
cassava45561.m1
M02516_2.00 		Manihot esculenta
KGGVCCCACH
DGTGGGBCCM		 PBM
Weirauch et al.(2014)
pTH9207 		0.937 0.488
VIT_15s0048g01150
M02515_2.00 		Vitis vinifera
NNGGNCCCAC
GTGGGNCCNN		 PBM
Weirauch et al.(2014)
pTH9294 		0.935 0.472
OsI_08196
M02513_2.00 		Oryza sativa
GGGCCCAC
GTGGGCCC		 PBM
Weirauch et al.(2014)
pTH9274 		0.934 0.448
OS02G0635800
M02512_2.00 		Oryza sativa
NBGGGCCCVN
NBGGGCCCVN		 PBM
Weirauch et al.(2014)
pTH8856 		0.934 0.440
PK14653.1
M01317_2.00 		Cannabis sativa
BGGSCCCAC
GTGGGSCCV		 PBM
Lambert et al.(2019)
pTH11324 		0.933 0.464
PK14653.1
M02517_2.00 		Cannabis sativa
BTGGGCCCAV
BTGGGCCCAV		 PBM
Weirauch et al.(2014)
pTH9586 		0.933 0.464
LjSGA_053525.1
M02518_2.00 		Lotus japonicus
GGNCCCAC
GTGGGNCC		 PBM
Weirauch et al.(2014)
pTH9201 		0.930 0.448
TCP11
M11395_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP11_01 		0.870 0.392
TCP11
M11396_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP11_02 		0.870 0.392
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.10273s0152.1.p TCP 65 189

Links

Other TCP family TFs
Other Boechera stricta TFs

650 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_19761 Aegilops tauschii F775_19761 N
F775_13455 Aegilops tauschii F775_13455 N
Aquca_005_00168 Aquilegia coerulea Aquca_005_00168 N
anac090 Arabidopsis lyrata fgenesh2_kg.6__2228__AT5G22380.1 N
NAC090 Arabidopsis thaliana AT5G22380 N
Bostr.26527s0039 Boechera stricta Bostr.26527s0039 N
BRADI2G55780 Brachypodium distachyon BRADI2G55780 N
Bo9g148540 Brassica oleracea Bo9g148540 N
Bo3g016870 Brassica oleracea Bo3g016870 N
Bo2g023870 Brassica oleracea Bo2g023870 N
Bra020188 Brassica rapa Bra020188 N
Bra002408 Brassica rapa Bra002408 N
PK27925.1 Cannabis sativa PK27925.1 N
Cagra.0846s0014 Capsella grandiflora Cagra.0846s0014 N
Carubv10001788m.g Capsella rubella Carubv10001788m.g N
evm.TU.supercontig_195.14 Carica papaya evm.TU.supercontig_195.14 N
Cla018691 Citrullus lanatus Cla018691 N
Cucsa.083530 Cucumis sativus Cucsa.083530 N
Eucgr.A02635 Eucalyptus grandis Eucgr.A02635 N
Eucgr.A02636 Eucalyptus grandis Eucgr.A02636 N
Eucgr.A02638 Eucalyptus grandis Eucgr.A02638 N
Thhalv10014563m.g Eutrema salsugineum Thhalv10014563m.g N
Gorai.001G122800 Gossypium raimondii Gorai.001G122800 N
Gorai.002G238300 Gossypium raimondii Gorai.002G238300 N
MLOC_60153 Hordeum vulgare MLOC_60153 N
MLOC_7757 Hordeum vulgare MLOC_7757 N
LPERR11G02950 Leersia perrieri LPERR11G02950 N
LPERR01G32790 Leersia perrieri LPERR01G32790 N
LPERR05G14390 Leersia perrieri LPERR05G14390 N
LPERR12G03220 Leersia perrieri LPERR12G03220 N
Lus10020643.g Linum usitatissimum Lus10020643.g N
Lus10004846.g Linum usitatissimum Lus10004846.g N
MDP0000130797 Malus domestica MDP0000130797 N
MDP0000759504 Malus domestica MDP0000759504 N
cassava14235.m1 Manihot esculenta cassava14235.m1 N
cassava15688.m1 Manihot esculenta cassava15688.m1 N
cassava32867.m1 Manihot esculenta cassava32867.m1 N
GSMUA_Achr9G29750_001 Musa acuminata GSMUA_Achr9G29750_001 N
GSMUA_Achr8G01410_001 Musa acuminata GSMUA_Achr8G01410_001 N
GSMUA_Achr6G19400_001 Musa acuminata GSMUA_Achr6G19400_001 N
OBART12G03440 Oryza barthii OBART12G03440 N
OBART01G38190 Oryza barthii OBART01G38190 N
OB12G13350 Oryza brachyantha OB12G13350 N
OB05G26010 Oryza brachyantha OB05G26010 N
ORGLA12G0033100 Oryza glaberrima ORGLA12G0033100 N
ORGLA01G0320200 Oryza glaberrima ORGLA01G0320200 N
OGLUM01G42380 Oryza glumaepatula OGLUM01G42380 N
OGLUM12G04110 Oryza glumaepatula OGLUM12G04110 N
BGIOSGA004848 Oryza indica BGIOSGA004848 N
BGIOSGA037019 Oryza indica BGIOSGA037019 N
OMERI01G35090 Oryza meridionalis OMERI01G35090 N
ONIVA01G42870 Oryza nivara ONIVA01G42870 N
ONIVA12G03060 Oryza nivara ONIVA12G03060 N
OPUNC01G36980 Oryza punctata OPUNC01G36980 N
OPUNC05G16010 Oryza punctata OPUNC05G16010 N
OPUNC12G03240 Oryza punctata OPUNC12G03240 N
ORUFI01G41540 Oryza rufipogon ORUFI01G41540 N
OS12G0156100 Oryza sativa OS12G0156100 N
OS01G0862800 Oryza sativa OS01G0862800 N
Pavir.J36282 Panicum virgatum Pavir.J36282 N
Pavir.J04751 Panicum virgatum Pavir.J04751 N
Pavir.J02276 Panicum virgatum Pavir.J02276 N
30055.m001588 Ricinus communis 30055.m001588 N
Si022966m.g Setaria italica Si022966m.g N
Si002586m.g Setaria italica Si002586m.g N
Sb09g021780 Sorghum bicolor Sb09g021780 N
Sb03g040720 Sorghum bicolor Sb03g040720 N
TCM_041364 Theobroma cacao TCM_041364 N
TRAES3BF019300010CFD_g Triticum aestivum TRAES3BF019300010CFD_g N
Traes_5DL_43FC1B296 Triticum aestivum Traes_5DL_43FC1B296 N
Traes_1AL_C76BCC7EC Triticum aestivum Traes_1AL_C76BCC7EC N
Traes_1AL_179FC28F2 Triticum aestivum Traes_1AL_179FC28F2 N
TRIUR3_33275 Triticum urartu TRIUR3_33275 N
TRIUR3_34272 Triticum urartu TRIUR3_34272 N
VIT_06s0080g00780 Vitis vinifera VIT_06s0080g00780 N
GRMZM5G832473 Zea mays GRMZM5G832473 N