Cagra.2527s0006 (Capsella grandiflora)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Cagra.2527s0006 T344737_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.936 0.575
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.936 0.575
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.936 0.575
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.928 0.547
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.925 0.538
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.914 0.566
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.887 0.443
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.885 0.462
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.885 0.462
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.862 0.443
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.862 0.443
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.839 0.406
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.2527s0006.1.p TCP 27 187

Links

Other TCP family TFs
Other Capsella grandiflora TFs

406 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.005G166500 Gossypium raimondii Gorai.005G166500 N
Gorai.002G182700 Gossypium raimondii Gorai.002G182700 N
MLOC_62426 Hordeum vulgare MLOC_62426 N
LjSGA_032871.1 Lotus japonicus LjSGA_032871.1 N
cassava6540.valid.m1 Manihot esculenta cassava6540.valid.m1 N
cassava12059.valid.m1 Manihot esculenta cassava12059.valid.m1 N
GSMUA_Achr9G14160_001 Musa acuminata GSMUA_Achr9G14160_001 N
GSMUA_Achr9G23140_001 Musa acuminata GSMUA_Achr9G23140_001 I
GSMUA_Achr8G23820_001 Musa acuminata GSMUA_Achr8G23820_001 N
GSMUA_Achr6G36010_001 Musa acuminata GSMUA_Achr6G36010_001 N
GSMUA_Achr5G22630_001 Musa acuminata GSMUA_Achr5G22630_001 N
GSMUA_Achr5G21990_001 Musa acuminata GSMUA_Achr5G21990_001 N
GSMUA_Achr3G05360_001 Musa acuminata GSMUA_Achr3G05360_001 N
GSMUA_Achr10G23280_001 Musa acuminata GSMUA_Achr10G23280_001 N
GSMUA_Achr10G02970_001 Musa acuminata GSMUA_Achr10G02970_001 N
Sb04g004940 Sorghum bicolor Sb04g004940 N
TCM_008772 Theobroma cacao TCM_008772 N
GRMZM2G126827 Zea mays GRMZM2G126827 N
GRMZM2G163813 Zea mays GRMZM2G163813 N
GRMZM2G156621 Zea mays GRMZM2G156621 N