CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

evm.TU.supercontig_179.29 *(Carica papaya)* TCP
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF03634 (TCP)	IPR005333	evm.TU.supercontig_179.29	T344815_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PK12240.1 M01314_2.00	Cannabis sativa	GGGSCCMS	SKGGSCCC	PBM Lambert et al.(2019) pTH10180	0.920	0.496
TCP1 M07276_2.00	Arabidopsis thaliana	RNNNDNHNDNNNDDDNNNRKGGGRCCCACH	DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY	Dap-seq OMalley et al.(2016) TCP1_col_a	0.916	0.543
PK19717.1 M01318_2.00	Cannabis sativa	GGGSCCCMC	GKGGGSCCC	PBM Lambert et al.(2019) pTH10142	0.905	0.550
TB1 M01312_2.00	Oryza sativa	GGSCCCCCYM	KRGGGGGSCC	PBM Lambert et al.(2019) pTH8740	0.843	0.527
For this family, TFs with SR scores > 0.822* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
evm.model.supercontig_179.29	TCP	89	217	AVKKDRHSKIFTAQGLRDRRVRLSIDIARKFFALQDMLGFDKASKTLDWLLKKSRKSIKELAQMKSNSNSGVVKSLSSSSISESENLEGPISRSCKEQKVKKLQKAAKESRAKARERARERTKEKMCTS

Links
Other TCP family TFs
Other *Carica papaya* TFs