evm.TU.supercontig_179.29 (Carica papaya)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 evm.TU.supercontig_179.29 T344815_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.920 0.496
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.916 0.543
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.905 0.550
TB1
M01312_2.00 		Oryza sativa
GGSCCCCCYM
KRGGGGGSCC		 PBM
Lambert et al.(2019)
pTH8740 		0.843 0.527
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_179.29 TCP 89 217

Links

Other TCP family TFs
Other Carica papaya TFs

159 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra004212 Brassica rapa Bra004212 I 0.932
Cla016709 Citrullus lanatus Cla016709 I 0.930
mgf019480m Mimulus guttatus mgf019480m I 0.930
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.926
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.926
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.923
30167.m000856 Ricinus communis 30167.m000856 I 0.923
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.920
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.920
PK12240.1 Cannabis sativa PK12240.1 D 0.920
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.918
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.918
TCP1 Arabidopsis thaliana AT1G67260 D 0.916
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.916
Bo6g099040 Brassica oleracea Bo6g099040 I 0.915
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.914
Bo6g103670 Brassica oleracea Bo6g103670 I 0.913
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.912
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.911
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.910
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.908
Bra004097 Brassica rapa Bra004097 I 0.907
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.907
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.907
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.906
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.906
TCM_019518 Theobroma cacao TCM_019518 I 0.906
PK19717.1 Cannabis sativa PK19717.1 D 0.905
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.902
Cla007227 Citrullus lanatus Cla007227 I 0.902
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.902
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.900
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.899
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.898
BRC2 Arabidopsis thaliana AT1G68800 I 0.897
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.897
29738.m001041 Ricinus communis 29738.m001041 I 0.897
mgf022233m Mimulus guttatus mgf022233m I 0.897
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.897
MDP0000173048 Malus domestica MDP0000173048 I 0.896
Bo2g055640 Brassica oleracea Bo2g055640 I 0.894
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.893
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.892
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.891
Bra034010 Brassica rapa Bra034010 I 0.890
LPERR09G06870 Leersia perrieri LPERR09G06870 I 0.890
Cla002355 Citrullus lanatus Cla002355 I 0.889
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.889
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.889
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.889
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.886
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.885
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.884
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.884
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.884
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.883
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.882
Sb02g024450 Sorghum bicolor Sb02g024450 I 0.881
Si033183m.g Setaria italica Si033183m.g I 0.880
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.880
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.880
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.877
OBART09G10040 Oryza barthii OBART09G10040 I 0.877
OGLUM09G10300 Oryza glumaepatula OGLUM09G10300 I 0.877
OPUNC09G08520 Oryza punctata OPUNC09G08520 I 0.877
OS09G0410500 Oryza sativa OS09G0410500 I 0.877
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.876
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.876
TCM_011874 Theobroma cacao TCM_011874 I 0.876
Pavir.Ba01820 Panicum virgatum Pavir.Ba01820 I 0.876
BGIOSGA030744 Oryza indica BGIOSGA030744 I 0.875
ONIVA09G09540 Oryza nivara ONIVA09G09540 I 0.875
ORUFI09G10660 Oryza rufipogon ORUFI09G10660 I 0.875
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.875
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.872
Pm029002 Prunus mume Pm029002 I 0.872
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.868
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.867
GRMZM2G060319 Zea mays GRMZM2G060319 I 0.866
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.866
MDP0000272980 Malus domestica MDP0000272980 I 0.866
chr4.LjB15O07.110.nc Lotus japonicus chr4.LjB15O07.110.nc I 0.866
GRMZM2G064628 Zea mays GRMZM2G064628 I 0.865
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.865
PGSC0003DMG400003362 Solanum tuberosum PGSC0003DMG400003362 I 0.864
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.864
BRADI3G36590 Brachypodium distachyon BRADI3G36590 N 0.862
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.862
Sb07g021140 Sorghum bicolor Sb07g021140 I 0.861
Bo2g061250 Brassica oleracea Bo2g061250 I 0.859
Bra038350 Brassica rapa Bra038350 I 0.859
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.858
Pavir.Bb02154 Panicum virgatum Pavir.Bb02154 I 0.858
MLOC_4614 Hordeum vulgare MLOC_4614 I 0.857
Pm015499 Prunus mume Pm015499 I 0.857
Lus10034072.g Linum usitatissimum Lus10034072.g I 0.857
OMERI09G07770 Oryza meridionalis OMERI09G07770 I 0.855
GRMZM2G110242 Zea mays GRMZM2G110242 I 0.854
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.854
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.853
BRADI4G29980 Brachypodium distachyon BRADI4G29980 I 0.852
Si015230m.g Setaria italica Si015230m.g I 0.852
GLYMA05G07943 Glycine max GLYMA05G07943 I 0.851
mgf026636m Mimulus guttatus mgf026636m I 0.851
PDK_20s1689851g001 Phoenix dactylifera PDK_20s1689851g001 I 0.850
GRMZM2G166687 Zea mays GRMZM2G166687 I 0.849
LPERR08G12880 Leersia perrieri LPERR08G12880 I 0.849
AC233950.1_FG002 Zea mays AC233950.1_FG002 I 0.848
Si038692m.g Setaria italica Si038692m.g I 0.848
TRIUR3_20728 Triticum urartu TRIUR3_20728 I 0.847
Pavir.Ia00838 Panicum virgatum Pavir.Ia00838 I 0.846
Pavir.Ib04362 Panicum virgatum Pavir.Ib04362 I 0.846
MTR_4g111935 Medicago truncatula MTR_4g111935 I 0.845
Traes_5BL_19F383CC71 Triticum aestivum Traes_5BL_19F383CC71 I 0.845
BGIOSGA013417 Oryza indica BGIOSGA013417 I 0.843
GSMUA_Achr2G22480_001 Musa acuminata GSMUA_Achr2G22480_001 I 0.843
OGLUM03G31540 Oryza glumaepatula OGLUM03G31540 I 0.843
ONIVA03G32600 Oryza nivara ONIVA03G32600 I 0.843
ORUFI03G32570 Oryza rufipogon ORUFI03G32570 I 0.843
TB1 Oryza sativa OS03G0706500 D 0.843
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.843
OBART03G31290 Oryza barthii OBART03G31290 I 0.841
OMERI03G27910 Oryza meridionalis OMERI03G27910 I 0.841
ORGLA03G0289500 Oryza glaberrima ORGLA03G0289500 I 0.841
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.840
MLOC_70116 Hordeum vulgare MLOC_70116 I 0.839
OPUNC03G28490 Oryza punctata OPUNC03G28490 I 0.838
LPERR03G25950 Leersia perrieri LPERR03G25950 I 0.837
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.837
Pm030202 Prunus mume Pm030202 I 0.837
Lus10003078.g Linum usitatissimum Lus10003078.g I 0.837
GRMZM2G031905 Zea mays GRMZM2G031905 I 0.836
MLOC_58142 Hordeum vulgare MLOC_58142 I 0.836
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.835
BRADI1G11060 Brachypodium distachyon BRADI1G11060 I 0.834
PGSC0003DMG400004054 Solanum tuberosum PGSC0003DMG400004054 N 0.834
Solyc06g069240.1 Solanum lycopersicum Solyc06g069240.1 N 0.834
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.833
Traes_5DL_46A3B0DAB1 Triticum aestivum Traes_5DL_46A3B0DAB1 I 0.833
Traes_4BS_DC076554D Triticum aestivum Traes_4BS_DC076554D I 0.831
OPUNC08G13710 Oryza punctata OPUNC08G13710 I 0.830
Sb01g010690 Sorghum bicolor Sb01g010690 I 0.830
TCM_012252 Theobroma cacao TCM_012252 I 0.830
Traes_4AL_75D069945 Triticum aestivum Traes_4AL_75D069945 I 0.830
Traes_4DS_59A46B69A Triticum aestivum Traes_4DS_59A46B69A I 0.830
TRIUR3_31795 Triticum urartu TRIUR3_31795 I 0.830
GLYMA17G13065 Glycine max GLYMA17G13065 I 0.828
GRMZM2G062711 Zea mays GRMZM2G062711 I 0.828
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.828
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.827
F775_01923 Aegilops tauschii F775_01923 I 0.826
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.826
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.826
Pavir.Fa00870 Panicum virgatum Pavir.Fa00870 I 0.826
Gorai.008G285300 Gossypium raimondii Gorai.008G285300 I 0.824
ORGLA08G0137200 Oryza glaberrima ORGLA08G0137200 I 0.823
ONIVA08G16720 Oryza nivara ONIVA08G16720 I 0.822
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I 0.822
Pavir.Fb01590 Panicum virgatum Pavir.Fb01590 I 0.822