MTR_6g017055 (Medicago truncatula)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 MTR_6g017055 T344046_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.891 0.418
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.891 0.425
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.866 0.458
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH25304 TCP 124 276

Links

Other TCP family TFs
Other Medicago truncatula TFs

82 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.944
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.942
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.942
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.940
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.935
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.934
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.934
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.925
Cla016709 Citrullus lanatus Cla016709 I 0.924
29738.m001041 Ricinus communis 29738.m001041 I 0.922
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.921
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.916
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.915
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.912
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.908
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.906
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.906
Bra004212 Brassica rapa Bra004212 I 0.904
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.904
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.904
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.900
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.899
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.897
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.896
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.896
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.896
Bo6g103670 Brassica oleracea Bo6g103670 I 0.895
TCM_019518 Theobroma cacao TCM_019518 I 0.895
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.894
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.893
Cla007227 Citrullus lanatus Cla007227 I 0.893
Bra004097 Brassica rapa Bra004097 I 0.892
mgf019480m Mimulus guttatus mgf019480m I 0.892
Bo6g099040 Brassica oleracea Bo6g099040 I 0.891
TCP1 Arabidopsis thaliana AT1G67260 D 0.891
PK12240.1 Cannabis sativa PK12240.1 D 0.891
Bra034010 Brassica rapa Bra034010 I 0.890
30167.m000856 Ricinus communis 30167.m000856 I 0.887
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.886
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.886
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.885
Bo2g055640 Brassica oleracea Bo2g055640 I 0.885
Cla002355 Citrullus lanatus Cla002355 I 0.885
MDP0000173048 Malus domestica MDP0000173048 I 0.885
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.885
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.884
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.883
TCM_011874 Theobroma cacao TCM_011874 I 0.883
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.883
Pm015499 Prunus mume Pm015499 I 0.881
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.881
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.881
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.880
Pm029002 Prunus mume Pm029002 I 0.880
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.879
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.877
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.875
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.874
BRC2 Arabidopsis thaliana AT1G68800 I 0.874
Bo2g061250 Brassica oleracea Bo2g061250 I 0.874
Bra038350 Brassica rapa Bra038350 I 0.874
mgf022233m Mimulus guttatus mgf022233m I 0.873
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.871
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.870
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.870
MDP0000272980 Malus domestica MDP0000272980 I 0.869
PK19717.1 Cannabis sativa PK19717.1 D 0.866
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.858
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.858
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.858
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.856
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.853
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.843
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.838
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.837
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.835
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.832
mgf026636m Mimulus guttatus mgf026636m I 0.829
Lus10034072.g Linum usitatissimum Lus10034072.g I 0.828
Lus10003078.g Linum usitatissimum Lus10003078.g I 0.828
BRADI3G36590 Brachypodium distachyon BRADI3G36590 N 0.826
Traes_5BL_19F383CC71 Triticum aestivum Traes_5BL_19F383CC71 I 0.824