cassava10552.m1 (Manihot esculenta)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 cassava10552.m1 T344594_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.923 0.457
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.908 0.500
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.899 0.550
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava10552.m1 TCP 86 225

Links

Other TCP family TFs
Other Manihot esculenta TFs

120 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.947
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.946
30167.m000856 Ricinus communis 30167.m000856 I 0.941
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.940
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.938
BRC2 Arabidopsis thaliana AT1G68800 I 0.931
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.931
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.931
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.927
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.927
Cla016709 Citrullus lanatus Cla016709 I 0.926
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.923
PK12240.1 Cannabis sativa PK12240.1 D 0.923
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.922
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.922
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.922
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.922
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.921
MDP0000272980 Malus domestica MDP0000272980 I 0.920
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.918
TCM_019518 Theobroma cacao TCM_019518 I 0.918
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.918
Bra004097 Brassica rapa Bra004097 I 0.916
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.916
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.914
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.913
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.912
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.912
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.910
TCP1 Arabidopsis thaliana AT1G67260 D 0.908
Cla007227 Citrullus lanatus Cla007227 I 0.908
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.907
Bo6g103670 Brassica oleracea Bo6g103670 I 0.906
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.906
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.906
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.906
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.905
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.904
Cla002355 Citrullus lanatus Cla002355 I 0.904
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.904
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.903
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.901
Bra004212 Brassica rapa Bra004212 I 0.900
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.900
PK19717.1 Cannabis sativa PK19717.1 D 0.899
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.897
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.896
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.896
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.894
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.894
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.894
Bo2g061250 Brassica oleracea Bo2g061250 I 0.893
Bra038350 Brassica rapa Bra038350 I 0.893
TCM_011874 Theobroma cacao TCM_011874 I 0.893
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.892
Pm015499 Prunus mume Pm015499 I 0.892
29738.m001041 Ricinus communis 29738.m001041 I 0.892
mgf019480m Mimulus guttatus mgf019480m I 0.891
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.891
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.889
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.889
Bo6g099040 Brassica oleracea Bo6g099040 I 0.888
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.888
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.888
Pm029002 Prunus mume Pm029002 I 0.888
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.887
MDP0000173048 Malus domestica MDP0000173048 I 0.887
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.886
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.886
MLOC_70116 Hordeum vulgare MLOC_70116 I 0.885
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.884
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.884
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.883
Traes_4BS_DC076554D Triticum aestivum Traes_4BS_DC076554D I 0.882
Traes_4AL_75D069945 Triticum aestivum Traes_4AL_75D069945 I 0.881
Traes_4DS_59A46B69A Triticum aestivum Traes_4DS_59A46B69A I 0.881
TRIUR3_31795 Triticum urartu TRIUR3_31795 I 0.881
mgf024687m Mimulus guttatus mgf024687m I 0.877
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.876
Bra034010 Brassica rapa Bra034010 I 0.868
Sb01g010690 Sorghum bicolor Sb01g010690 I 0.868
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.867
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.867
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.865
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.864
Bo2g055640 Brassica oleracea Bo2g055640 I 0.862
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.860
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.860
GLYMA17G13065 Glycine max GLYMA17G13065 I 0.858
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.858
GRMZM2G031905 Zea mays GRMZM2G031905 I 0.856
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.856
Pm030202 Prunus mume Pm030202 I 0.856
mgf022233m Mimulus guttatus mgf022233m I 0.852
mgf026636m Mimulus guttatus mgf026636m I 0.851
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.851
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.850
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.850
GRMZM2G062711 Zea mays GRMZM2G062711 I 0.848
GSMUA_Achr2G22480_001 Musa acuminata GSMUA_Achr2G22480_001 I 0.848
TCM_012252 Theobroma cacao TCM_012252 I 0.848
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I 0.848
Gorai.008G285300 Gossypium raimondii Gorai.008G285300 I 0.848
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.846
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.846
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.842
chr4.LjB15O07.110.nc Lotus japonicus chr4.LjB15O07.110.nc I 0.842
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.841
30174.m008721 Ricinus communis 30174.m008721 I 0.840
OPUNC03G28490 Oryza punctata OPUNC03G28490 I 0.837
AC233950.1_FG002 Zea mays AC233950.1_FG002 I 0.836
BRADI1G11060 Brachypodium distachyon BRADI1G11060 I 0.835
GRMZM2G110242 Zea mays GRMZM2G110242 I 0.835
GLYMA05G07943 Glycine max GLYMA05G07943 I 0.832
Lus10003078.g Linum usitatissimum Lus10003078.g I 0.829
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.825
Lus10034072.g Linum usitatissimum Lus10034072.g I 0.825
PDK_20s1689851g001 Phoenix dactylifera PDK_20s1689851g001 I 0.825
evm.TU.supercontig_13.48 Carica papaya evm.TU.supercontig_13.48 N 0.824
MTR_4g111935 Medicago truncatula MTR_4g111935 I 0.823