CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Aquca_002_01093
(
Aquilegia coerulea
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03634 (TCP)
IPR005333
Aquca_002_01093
T344685_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK12240.1
M01314_2.00
Cannabis sativa
GGGSCCMS
SKGGSCCC
PBM
Lambert et al.(2019)
pTH10180
0.923
0.432
TCP1
M07276_2.00
Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY
Dap-seq
OMalley et al.(2016)
TCP1_col_a
0.845
0.411
PK19717.1
M01318_2.00
Cannabis sativa
GGGSCCCMC
GKGGGSCCC
PBM
Lambert et al.(2019)
pTH10142
0.845
0.459
TB1
M01312_2.00
Oryza sativa
GGSCCCCCYM
KRGGGGGSCC
PBM
Lambert et al.(2019)
pTH8740
0.836
0.432
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Aquca_002_01093.1
TCP
82
227
SGKKDRHSKIVTAQGTRDRRMRLSLEIARKFFDLQDILGFDKASKTVEWLLGKSEEAINELRKGCTGETKSTVSSTSECDVVSEIDERQKGLTKVDEKQSIDGIVLREKTTTKMLSRTTCHILAKDSRVKARARARERTLEKMSRL
Links
Other
TCP
family TFs
Other
Aquilegia coerulea
TFs
137 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cucsa.280880
Cucumis sativus
Cucsa.280880
I
0.936
MDP0000272980
Malus domestica
MDP0000272980
I
0.926
gene03882-v1.0-hybrid
Fragaria vesca
gene03882-v1.0-hybrid
I
0.924
cassava10552.m1
Manihot esculenta
cassava10552.m1
I
0.923
SapurV1A.0682s0140
Salix purpurea
SapurV1A.0682s0140
I
0.923
PK12240.1
Cannabis sativa
PK12240.1
D
0.923
30167.m000856
Ricinus communis
30167.m000856
I
0.922
POPTR_0017s13980
Populus trichocarpa
POPTR_0017s13980
I
0.921
BRC2
Arabidopsis thaliana
AT1G68800
I
0.917
BRC2
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_2000933
I
0.917
SapurV1A.0304s0080
Salix purpurea
SapurV1A.0304s0080
I
0.915
Ciclev10033382m.g
Citrus clementina
Ciclev10033382m.g
I
0.914
orange1.1g039323m.g
Citrus sinensis
orange1.1g039323m.g
I
0.914
POPTR_0010s14030
Populus trichocarpa
POPTR_0010s14030
I
0.912
BRC2
Vitis vinifera
VIT_01s0011g02920
I
0.910
Cagra.1157s0001
Capsella grandiflora
Cagra.1157s0001
I
0.909
Carubv10020487m.g
Capsella rubella
Carubv10020487m.g
I
0.909
cassava16230.m1
Manihot esculenta
cassava16230.m1
I
0.907
Bostr.26959s0002
Boechera stricta
Bostr.26959s0002
I
0.906
TCP1
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_2001059
I
0.905
Cucsa.238090
Cucumis sativus
Cucsa.238090
I
0.905
evm.TU.supercontig_1401.1
Carica papaya
evm.TU.supercontig_1401.1
I
0.905
29738.m001041
Ricinus communis
29738.m001041
I
0.903
PGSC0003DMG400007467
Solanum tuberosum
PGSC0003DMG400007467
I
0.901
Cla002355
Citrullus lanatus
Cla002355
I
0.901
MTR_1g103380
Medicago truncatula
MTR_1g103380
I
0.900
Eucgr.B00699
Eucalyptus grandis
Eucgr.B00699
I
0.900
Lus10021713.g
Linum usitatissimum
Lus10021713.g
I
0.900
Ciclev10024246m.g
Citrus clementina
Ciclev10024246m.g
I
0.899
orange1.1g035911m.g
Citrus sinensis
orange1.1g035911m.g
I
0.899
Gorai.008G186800
Gossypium raimondii
Gorai.008G186800
I
0.898
POPTR_0008s11470
Populus trichocarpa
POPTR_0008s11470
I
0.896
MDP0000173048
Malus domestica
MDP0000173048
I
0.896
PRUPE_ppa016240mg
Prunus persica
PRUPE_ppa016240mg
I
0.895
Pm029002
Prunus mume
Pm029002
I
0.895
TCM_011874
Theobroma cacao
TCM_011874
I
0.894
TCM_019518
Theobroma cacao
TCM_019518
I
0.894
Aquca_026_00208
Aquilegia coerulea
Aquca_026_00208
I
0.894
Cla016709
Citrullus lanatus
Cla016709
I
0.893
Bra004097
Brassica rapa
Bra004097
I
0.892
Solyc04g006980.1
Solanum lycopersicum
Solyc04g006980.1
I
0.892
Solyc05g009900.1
Solanum lycopersicum
Solyc05g009900.1
I
0.892
Gorai.001G200400
Gossypium raimondii
Gorai.001G200400
I
0.892
Cucsa.031600
Cucumis sativus
Cucsa.031600
I
0.891
PRUPE_ppa015026mg
Prunus persica
PRUPE_ppa015026mg
I
0.890
Pm030202
Prunus mume
Pm030202
I
0.890
mgf024687m
Mimulus guttatus
mgf024687m
I
0.886
Lus10035055.g
Linum usitatissimum
Lus10035055.g
I
0.886
Cucsa.283930
Cucumis sativus
Cucsa.283930
I
0.885
PGSC0003DMG400000823
Solanum tuberosum
PGSC0003DMG400000823
I
0.884
Cla007227
Citrullus lanatus
Cla007227
I
0.884
GLYMA18G51581
Glycine max
GLYMA18G51581
I
0.882
MTR_7g018500
Medicago truncatula
MTR_7g018500
I
0.882
Solyc03g119770.2
Solanum lycopersicum
Solyc03g119770.2
I
0.882
Bostr.26959s0184
Boechera stricta
Bostr.26959s0184
I
0.882
chr5.CM0357.550.nc
Lotus japonicus
chr5.CM0357.550.nc
I
0.882
cassava32886.m1
Manihot esculenta
cassava32886.m1
I
0.881
cassava9378.m1
Manihot esculenta
cassava9378.m1
I
0.881
PGSC0003DMG400005705
Solanum tuberosum
PGSC0003DMG400005705
I
0.880
30174.m008721
Ricinus communis
30174.m008721
I
0.880
POPTR_0015s03140
Populus trichocarpa
POPTR_0015s03140
I
0.878
PRUPE_ppa027156mg
Prunus persica
PRUPE_ppa027156mg
I
0.878
Pm015499
Prunus mume
Pm015499
I
0.877
chr1.LjB10L14.10.nc
Lotus japonicus
chr1.LjB10L14.10.nc
I
0.877
GLYMA13G07475
Glycine max
GLYMA13G07475
I
0.876
GLYMA19G05921
Glycine max
GLYMA19G05921
I
0.876
POPTR_0012s05660
Populus trichocarpa
POPTR_0012s05660
I
0.875
Bo6g103670
Brassica oleracea
Bo6g103670
I
0.874
SapurV1A.0301s0010
Salix purpurea
SapurV1A.0301s0010
I
0.873
GLYMA08G28691
Glycine max
GLYMA08G28691
I
0.872
SapurV1A.0583s0060
Salix purpurea
SapurV1A.0583s0060
I
0.872
SapurV1A.1895s0010
Salix purpurea
SapurV1A.1895s0010
I
0.872
SapurV1A.1895s0020
Salix purpurea
SapurV1A.1895s0020
I
0.872
GLYMA10G39141
Glycine max
GLYMA10G39141
I
0.869
Traes_4BS_DC076554D
Triticum aestivum
Traes_4BS_DC076554D
I
0.869
mgf026636m
Mimulus guttatus
mgf026636m
I
0.869
Bo2g061250
Brassica oleracea
Bo2g061250
I
0.868
Bra038350
Brassica rapa
Bra038350
I
0.868
MLOC_70116
Hordeum vulgare
MLOC_70116
I
0.868
Traes_4AL_75D069945
Triticum aestivum
Traes_4AL_75D069945
I
0.868
Traes_4DS_59A46B69A
Triticum aestivum
Traes_4DS_59A46B69A
I
0.868
TRIUR3_31795
Triticum urartu
TRIUR3_31795
I
0.868
GLYMA04G22407
Glycine max
GLYMA04G22407
I
0.867
mgf019480m
Mimulus guttatus
mgf019480m
I
0.867
Eucgr.J01466
Eucalyptus grandis
Eucgr.J01466
I
0.867
Traes_5DL_46A3B0DAB1
Triticum aestivum
Traes_5DL_46A3B0DAB1
I
0.865
TCP1
Vitis vinifera
VIT_14s0083g00150
I
0.865
chr2.LjB17A04.40.nc
Lotus japonicus
chr2.LjB17A04.40.nc
I
0.865
evm.TU.supercontig_179.29
Carica papaya
evm.TU.supercontig_179.29
I
0.864
GRMZM2G110242
Zea mays
GRMZM2G110242
I
0.863
Sb01g010690
Sorghum bicolor
Sb01g010690
I
0.861
GLYMA17G13065
Glycine max
GLYMA17G13065
I
0.860
Carubv10020555m.g
Capsella rubella
Carubv10020555m.g
I
0.860
Bra004212
Brassica rapa
Bra004212
I
0.858
GSMUA_Achr2G22480_001
Musa acuminata
GSMUA_Achr2G22480_001
I
0.858
Cagra.1125s0016
Capsella grandiflora
Cagra.1125s0016
I
0.858
Bo6g099040
Brassica oleracea
Bo6g099040
I
0.855
MTR_6g017055
Medicago truncatula
MTR_6g017055
I
0.853
Gorai.008G285300
Gossypium raimondii
Gorai.008G285300
I
0.852
PGSC0003DMG400004054
Solanum tuberosum
PGSC0003DMG400004054
N
0.851
Solyc06g069240.1
Solanum lycopersicum
Solyc06g069240.1
N
0.851
TCM_012252
Theobroma cacao
TCM_012252
I
0.850
OPUNC03G28490
Oryza punctata
OPUNC03G28490
I
0.849
Thhalv10019499m.g
Eutrema salsugineum
Thhalv10019499m.g
I
0.848
AC233950.1_FG002
Zea mays
AC233950.1_FG002
I
0.847
TCP1
Arabidopsis thaliana
AT1G67260
D
0.845
GLYMA20G28670
Glycine max
GLYMA20G28670
I
0.845
PK19717.1
Cannabis sativa
PK19717.1
D
0.845
Bo2g055640
Brassica oleracea
Bo2g055640
I
0.844
MDP0000224810
Malus domestica
MDP0000224810
N
0.844
GRMZM2G031905
Zea mays
GRMZM2G031905
I
0.840
Bra034010
Brassica rapa
Bra034010
I
0.839
Pavir.Fa00870
Panicum virgatum
Pavir.Fa00870
I
0.838
BRADI4G29980
Brachypodium distachyon
BRADI4G29980
I
0.837
OPUNC08G13710
Oryza punctata
OPUNC08G13710
I
0.837
BGIOSGA013417
Oryza indica
BGIOSGA013417
I
0.836
ONIVA03G32600
Oryza nivara
ONIVA03G32600
I
0.836
ORUFI03G32570
Oryza rufipogon
ORUFI03G32570
I
0.836
TB1
Oryza sativa
OS03G0706500
D
0.836
OMERI09G07770
Oryza meridionalis
OMERI09G07770
I
0.835
TRIUR3_20728
Triticum urartu
TRIUR3_20728
I
0.835
Gorai.007G007500
Gossypium raimondii
Gorai.007G007500
I
0.835
PDK_20s1689851g001
Phoenix dactylifera
PDK_20s1689851g001
I
0.835
OGLUM03G31540
Oryza glumaepatula
OGLUM03G31540
I
0.833
GRMZM2G062711
Zea mays
GRMZM2G062711
I
0.832
GSMUA_Achr2G21050_001
Musa acuminata
GSMUA_Achr2G21050_001
I
0.832
Cucsa.113660
Cucumis sativus
Cucsa.113660
N
0.832
F775_01923
Aegilops tauschii
F775_01923
I
0.830
GLYMA06G23410
Glycine max
GLYMA06G23410
N
0.829
GRMZM2G166687
Zea mays
GRMZM2G166687
I
0.826
LPERR08G12880
Leersia perrieri
LPERR08G12880
I
0.826
GRMZM2G055024
Zea mays
GRMZM2G055024
I
0.825
MLOC_4614
Hordeum vulgare
MLOC_4614
I
0.825
LjSGA_018294.2
Lotus japonicus
LjSGA_018294.2
I
0.825
MLOC_58142
Hordeum vulgare
MLOC_58142
I
0.824
evm.TU.supercontig_13.48
Carica papaya
evm.TU.supercontig_13.48
N
0.823
Pavir.Bb02154
Panicum virgatum
Pavir.Bb02154
I
0.822