Lus10042962.g (Linum usitatissimum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Lus10042962.g T344909_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP24
M02499_2.00 		Arabidopsis thaliana
NNNNRVMCVV
BBGKBYNNNN		 PBM
Weirauch et al.(2014)
pTH7337 		0.898 0.212
TCP24
M07272_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP24_colamp_a 		0.898 0.212
TCP24
M07273_2.00 		Arabidopsis thaliana
NNBGGGACCACH
DGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
TCP24_col 		0.898 0.212
TCP24
M02506_2.00 		Arabidopsis lyrata
NBKKNNMMVN
NBKKNNMMVN		 PBM
Weirauch et al.(2014)
pTH9227 		0.898 0.212
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10042962 TCP 144 341
Lus10042962 TCP 347 451

Links

Other TCP family TFs
Other Linum usitatissimum TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACYPI008958 Acyrthosiphon pisum ACYPI008958 N
AAEL009092 Aedes aegypti AAEL009092 N
Alligator_sinensis_CCG004678.1 Alligator sinensis Alligator_sinensis_CCG004678.1 N
Alligator_sinensis_CCG000180.1 Alligator sinensis Alligator_sinensis_CCG000180.1 N
AEPI009380 Anopheles epiroticus AEPI009380 N
AFAF012002 Anopheles farauti AFAF012002 N
AGAP001761 Anopheles gambiae AGAP001761 N
AMEM008456 Anopheles merus AMEM008456 N
Afo_R008528 Aptenodytes forsteri Afo_R008528 N
ENSAMXG00000012483 Astyanax mexicanus ENSAMXG00000012483 N
estExt_gwp.C_860189 Branchiostoma floridae estExt_gwp.C_860189 N
e_gw.479.83.1 Branchiostoma floridae e_gw.479.83.1 N
Cflo_01607--XP_001123059.1_APIME Camponotus floridanus Cflo_01607--XP_001123059.1_APIME N
Cmyd_10017930 Chelonia mydas Cmyd_10017930 N
CLEC001936 Cimex lectularius CLEC001936 N
lag1-like1 Ciona intestinalis ENSCING00000006059 N
ENSCSAVG00000009299 Ciona savignyi ENSCSAVG00000009299 N
KGM_16996 Danaus plexippus KGM_16996 N
KGM_15429 Danaus plexippus KGM_15429 N
cers3b Danio rerio ENSDARG00000036337 N
cers4b Danio rerio ENSDARG00000018619 N
DAPPUDRAFT_220106 Daphnia pulex DAPPUDRAFT_220106 N
YQE_11876 Dendroctonus ponderosae YQE_11876 N
ENSGMOG00000018099 Gadus morhua ENSGMOG00000018099 N
ENSGACG00000002760 Gasterosteus aculeatus ENSGACG00000002760 N
Hsal_14209--XP_001123059.1_APIME Harpegnathos saltator Hsal_14209--XP_001123059.1_APIME N
HMEL006147 Heliconius melpomene HMEL006147 N
HelroG82517 Helobdella robusta HelroG82517 N
ENSLOCG00000004390 Lepisosteus oculatus ENSLOCG00000004390 N
LDEC003623 Leptinotarsa decemlineata LDEC003623 N
LotgiG226091 Lottia gigantea LotgiG226091 N
ENSMGAG00000017003 Meleagris gallopavo ENSMGAG00000017003 N
MCINX005366 Melitaea cinxia MCINX005366 N
MCINX005367 Melitaea cinxia MCINX005367 N
ENSMICG00000014767 Microcebus murinus ENSMICG00000014767 N
ENSMICG00000017321 Microcebus murinus ENSMICG00000017321 N
ENSMODG00000004533 Monodelphis domestica ENSMODG00000004533 N
Myotis_brandtii_Lass6_10034918 Myotis brandtii Myotis_brandtii_Lass6_10034918 N
Ocbimv22016239m.g Octopus bimaculoides Ocbimv22016239m.g N
ENSONIG00000019701 Oreochromis niloticus ENSONIG00000019701 N
ENSONIG00000017329 Oreochromis niloticus ENSONIG00000017329 N
CERS5 Oryzias latipes ENSORLG00000010219 N
ENSOARG00000017904 Ovis aries ENSOARG00000017904 N
ENSPMAG00000008848 Petromyzon marinus ENSPMAG00000008848 N
ENSPFOG00000013551 Poecilia formosa ENSPFOG00000013551 N
RPRC008736 Rhodnius prolixus RPRC008736 N
ENSSHAG00000001747 Sarcophilus harrisii ENSSHAG00000001747 N
ENSSHAG00000003870 Sarcophilus harrisii ENSSHAG00000003870 N
ENSSHAG00000001540 Sarcophilus harrisii ENSSHAG00000001540 N
SINV24013 Solenopsis invicta SINV24013 N
SINV20227 Solenopsis invicta SINV20227 N
cers2a Takifugu rubripes ENSTRUG00000012292 N
CERS5 Takifugu rubripes ENSTRUG00000010435 N
cers4b Takifugu rubripes ENSTRUG00000000191 N
CERS5 Tetraodon nigroviridis ENSTNIG00000017897 N
cers2a Tetraodon nigroviridis ENSTNIG00000017545 N
AAL89720 Xenopus laevis AAL89720 N
cers3.L Xenopus laevis XB-GENE-6251639 N
cers5.S Xenopus laevis XB-GENE-866438 N
ENSXMAG00000010322 Xiphophorus maculatus ENSXMAG00000010322 N
L798_00373 Zootermopsis nevadensis L798_00373 N