MDP0000120671 (Malus domestica)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 MDP0000120671 T344910_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.955 0.496
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.954 0.496
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.925 0.444
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.925 0.444
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.922 0.391
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.883 0.376
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.883 0.376
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.877 0.376
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.851 0.301
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.843 0.346
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.839 0.316
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.839 0.316
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.839 0.316
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.834 0.293
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.834 0.293
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.828 0.331
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000120671 TCP 60 203

Links

Other TCP family TFs
Other Malus domestica TFs

379 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_22440 Aegilops tauschii F775_22440 N
F775_22671 Aegilops tauschii F775_22671 N
BRADI1G29857 Brachypodium distachyon BRADI1G29857 N
BRADI1G76207 Brachypodium distachyon BRADI1G76207 N
gene17203-v1.0-hybrid Fragaria vesca gene17203-v1.0-hybrid N
MLOC_65456 Hordeum vulgare MLOC_65456 N
LPERR03G02450 Leersia perrieri LPERR03G02450 N
LPERR06G23420 Leersia perrieri LPERR06G23420 N
MDP0000868556 Malus domestica MDP0000868556 N
MDP0000480581 Malus domestica MDP0000480581 N
cassava13355.valid.m1 Manihot esculenta cassava13355.valid.m1 N
GSMUA_Achr11G01320_001 Musa acuminata GSMUA_Achr11G01320_001 N
GSMUA_Achr3G00560_001 Musa acuminata GSMUA_Achr3G00560_001 N
GSMUA_Achr3G14720_001 Musa acuminata GSMUA_Achr3G14720_001 N
OBART03G02620 Oryza barthii OBART03G02620 N
OBART06G27980 Oryza barthii OBART06G27980 N
OBART03G02630 Oryza barthii OBART03G02630 N
OB03G12640 Oryza brachyantha OB03G12640 N
ORGLA06G0236900 Oryza glaberrima ORGLA06G0236900 N
ORGLA03G0024300 Oryza glaberrima ORGLA03G0024300 N
OGLUM03G02560 Oryza glumaepatula OGLUM03G02560 N
OGLUM06G29360 Oryza glumaepatula OGLUM06G29360 N
BGIOSGA011514 Oryza indica BGIOSGA011514 N
BGIOSGA020507 Oryza indica BGIOSGA020507 N
OLONG_016677 Oryza longistaminata OLONG_016677 N
OMERI06G27920 Oryza meridionalis OMERI06G27920 N
ONIVA03G02250 Oryza nivara ONIVA03G02250 N
ONIVA06G30950 Oryza nivara ONIVA06G30950 N
OPUNC03G02420 Oryza punctata OPUNC03G02420 N
OPUNC06G25510 Oryza punctata OPUNC06G25510 N
ORUFI03G02380 Oryza rufipogon ORUFI03G02380 N
ORUFI06G29930 Oryza rufipogon ORUFI06G29930 N
OS03G0133000 Oryza sativa OS03G0133000 N
OS06G0726300 Oryza sativa OS06G0726300 N
Pavir.J24394 Panicum virgatum Pavir.J24394 N
Pavir.Ia04458 Panicum virgatum Pavir.Ia04458 N
Pm020961 Prunus mume Pm020961 N
PRUPE_ppa009455mg Prunus persica PRUPE_ppa009455mg N
Si006994m.g Setaria italica Si006994m.g N
Si036757m.g Setaria italica Si036757m.g N
Sb01g048130 Sorghum bicolor Sb01g048130 N
Sb10g030770 Sorghum bicolor Sb10g030770 N
Traes_4BL_27B9E4CE6 Triticum aestivum Traes_4BL_27B9E4CE6 N
Traes_4DL_7CB8EC5A8 Triticum aestivum Traes_4DL_7CB8EC5A8 N
Traes_4DL_B29067862 Triticum aestivum Traes_4DL_B29067862 N
TRIUR3_18560 Triticum urartu TRIUR3_18560 N
TRIUR3_32216 Triticum urartu TRIUR3_32216 N
TRIUR3_33949 Triticum urartu TRIUR3_33949 N
anac036 Vitis vinifera VIT_03s0038g03410 N
GRMZM2G389557 Zea mays GRMZM2G389557 N
GRMZM2G126817 Zea mays GRMZM2G126817 N
GRMZM2G074358 Zea mays GRMZM2G074358 N
GRMZM2G059428 Zea mays GRMZM2G059428 N