Thhalv10011534m.g (Eutrema salsugineum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Thhalv10011534m.g T345083_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.971 0.736
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.971 0.736
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.971 0.736
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.959 0.579
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.957 0.570
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.935 0.529
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.891 0.380
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.884 0.405
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.883 0.388
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.874 0.397
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.853 0.413
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.853 0.413
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.842 0.355
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.839 0.372
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10011534m TCP 54 273
Thhalv10011535m TCP 54 273

Links

Other TCP family TFs
Other Eutrema salsugineum TFs

421 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g05527 Acanthocheilonema viteae nAv.1.0.1.g05527 N
AQUA011533 Anopheles quadriannulatus AQUA011533 I
ASU_12051 Ascaris suum ASU_12051 N
BGLB010819 Biomphalaria glabrata BGLB010819 I
Bm4897 Brugia malayi Bm4897 N
BTMF_0000608501 Brugia timori BTMF_0000608501 I
BTMF_0000429201 Brugia timori BTMF_0000429201 I
CGOC_0000554601 Cylicostephanus goldi CGOC_0000554601 N
KGM_08407 Danaus plexippus KGM_08407 I
DICVIV_03671 Dictyocaulus viviparus DICVIV_03671 N
nDi.2.2.2.g05496 Dirofilaria immitis nDi.2.2.2.g05496 N
DME_0000880101 Dracunculus medinensis DME_0000880101 N
EEL_0000947001 Elaeophora elaphi EEL_0000947001 N
EVEC_0000876601 Enterobius vermicularis EVEC_0000876601 N
D915_08967 Fasciola hepatica D915_08967 I
GPLIN_001569000 Globodera pallida GPLIN_001569000 I
HCOI01422600 Haemonchus contortus HCOI01422600 N
HCOI00218000 Haemonchus contortus HCOI00218000 N
HPLM_0000748001 Haemonchus placei HPLM_0000748001 N
HMEL017244 Heliconius melpomene HMEL017244 I
RBPJ Homo sapiens ENSG00000168214 D
nLs.2.1.2.g01496 Litomosoides sigmodontis nLs.2.1.2.g01496 N
LOAG_17798 Loa loa LOAG_17798 N
augustus_masked-nMf.1.1.scaf33168-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf33168-processed-gene-0.0 I
NECAME_17145 Necator americanus NECAME_17145 I
OESDEN_00868 Oesophagostomum dentatum OESDEN_00868 N
OFLC_0000481301 Onchocerca flexuosa OFLC_0000481301 N
nOo.2.0.1.g00014 Onchocerca ochengi nOo.2.0.1.g00014 N
WBGene00242124 Onchocerca volvulus WBGene00242124 N
PTRK_0000010500 Parastrongyloides trichosuri PTRK_0000010500 N
scaffold595-EXSNAP2012.9 Pristionchus exspectatus scaffold595-EXSNAP2012.9 I
PPA16711 Pristionchus pacificus PPA16711 I
SCUD_0000326701 Schistosoma curassoni SCUD_0000326701 I
Sjc_0108400 Schistosoma japonicum Sjc_0108400 I
SMRZ_0000802101 Schistosoma margrebowiei SMRZ_0000802101 I
SMTD_0001089601 Schistosoma mattheei SMTD_0001089601 I
SMUV_0000100801 Syphacia muris SMUV_0000100801 N
SMUV_0001013801 Syphacia muris SMUV_0001013801 I
TCLT_0000154801 Thelazia callipaeda TCLT_0000154801 N
TCNE_0000233801 Toxocara canis TCNE_0000233801 N
TRE_0000568701 Trichobilharzia regenti TRE_0000568701 I
ENSVPAG00000005031 Vicugna pacos ENSVPAG00000005031 I
WUBG_04020 Wuchereria bancrofti WUBG_04020 N