chr3.CM0160.1110.nc (Lotus japonicus)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 chr3.CM0160.1110.nc T345117_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.940 0.453
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.936 0.445
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.932 0.438
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.932 0.438
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.932 0.438
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.919 0.460
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.898 0.387
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.876 0.365
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.876 0.365
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.852 0.321
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.852 0.321
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.839 0.321
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.839 0.321
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.834 0.336
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.828 0.358
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr3.CM0160.1110.nc TCP 22 158

Links

Other TCP family TFs
Other Lotus japonicus TFs

401 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANCDUO_05680 Ancylostoma duodenale ANCDUO_05680 N 0.000
CGOC_0000554601 Cylicostephanus goldi CGOC_0000554601 N 0.000
DICVIV_03671 Dictyocaulus viviparus DICVIV_03671 N 0.000
HCOI00218000 Haemonchus contortus HCOI00218000 N 0.000
HCOI01422600 Haemonchus contortus HCOI01422600 N 0.000
HPLM_0000748001 Haemonchus placei HPLM_0000748001 N 0.000
Hba_17078 Heterorhabditis bacteriophora Hba_17078 N 0.000
NECAME_18743 Necator americanus NECAME_18743 N 0.000
NBR_0000281601 Nippostrongylus brasiliensis NBR_0000281601 N 0.000
NBR_0002014201 Nippostrongylus brasiliensis NBR_0002014201 N 0.000
OESDEN_00868 Oesophagostomum dentatum OESDEN_00868 N 0.000
scaffold595-EXSNAP2012.10 Pristionchus exspectatus scaffold595-EXSNAP2012.10 N 0.000
SVUK_0001898701 Strongylus vulgaris SVUK_0001898701 N 0.000
TELCIR_20071 Teladorsagia circumcincta TELCIR_20071 N 0.000