maker-pve_contig_463-fgenesh-gene-0.1 (Pythium vexans)
TCR/CxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03638 (TCR) IPR005172 maker-pve_contig_463-fgenesh-gene-0.1 T345551_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
fgeneshCV_pg.C_scaffold_18000164
M02534_2.00 		Chlorella vulgaris
NNNNDYRAAH
DTTYRHNNNN		 PBM
Weirauch et al.(2014)
pTH9252 		0.672 0.667
AT2G20110
M02520_2.00 		Arabidopsis thaliana
DTTTAAAH
DTTTAAAH		 PBM
Weirauch et al.(2014)
pTH7914 		0.672 0.652
TCX3
M01087_2.00 		Arabidopsis thaliana
NNDTTYAAAH
DTTTRAAHNN		 PBM
Sullivan et al.(2014)
pTH7218 		0.672 0.652
TCX3
M02522_2.00 		Arabidopsis thaliana
WTTYAAAH
DTTTRAAW		 PBM
Weirauch et al.(2014)
pTH7421 		0.672 0.652
TCX5
M02523_2.00 		Arabidopsis thaliana
NRTTCAAAYN
NRTTTGAAYN		 PBM
Weirauch et al.(2014)
pTH8164 		0.672 0.652
BRADI1G55710
M02525_2.00 		Brachypodium distachyon
NVTBYRVABN
NVTBYRVABN		 PBM
Weirauch et al.(2014)
pTH9241 		0.672 0.652
AT2G20110
M07295_2.00 		Arabidopsis thaliana
WWHWAADATTYAAAW
WTTTRAATHTTWDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_col_a 		0.672 0.652
AT2G20110
M07296_2.00 		Arabidopsis thaliana
WWHNAAATTYAAAHN
NDTTTRAATTTNDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_colamp_a 		0.672 0.652
TCX3
M07297_2.00 		Arabidopsis thaliana
DWTTYRAAWTTBAAW
WTTVAAATTYRAAWH		 Dap-seq
OMalley et al.(2016)
SOL1_colamp_a 		0.672 0.652
TCX3
M07298_2.00 		Arabidopsis thaliana
WTWWAAAATTYAAAW
WTTTRAATTTTWWAW		 Dap-seq
OMalley et al.(2016)
SOL1_col 		0.672 0.652
TCX2
M07300_2.00 		Arabidopsis thaliana
WWTYVAAATTYRAAW
WTTYRAATTTBRAWW		 Dap-seq
OMalley et al.(2016)
TCX2_col_a 		0.672 0.652
TCX2
M07301_2.00 		Arabidopsis thaliana
TTYVAAATTYRAAW
WTTYRAATTTBRAA		 Dap-seq
OMalley et al.(2016)
TCX2_colamp_a 		0.672 0.652
TSO1
M07299_2.00 		Arabidopsis thaliana
WWWTWDAAATTYAAA
TTTRAATTTHWAWWW		 Dap-seq
OMalley et al.(2016)
TSO1_col_a 		0.672 0.638
AT5G25790
M01319_2.00 		Arabidopsis thaliana
NHYRAAHN
NDTTYRDN		 PBM
Lambert et al.(2019)
pTH11533 		0.672 0.623
PK22848.1
M02532_2.00 		Cannabis sativa
NNNYNAAATTTNN
NNAAATTTNRNNN		 PBM
Weirauch et al.(2014)
pTH9724 		0.672 0.623
fgenesh1_pg.C_Chr_09.0001000301
M02533_2.00 		Ostreococcus tauri
NNNNNRHNN
NNDYNNNNN		 PBM
Weirauch et al.(2014)
pTH9457 		0.672 0.623
TCX4
M02521_2.00 		Arabidopsis thaliana
DWTTYRAAWH
DWTTYRAAWH		 PBM
Weirauch et al.(2014)
pTH7573 		0.672 0.580
XP_002124866.1
M01321_2.00 		Ciona intestinalis
NDTTYRAAN
NTTYRAAHN		 PBM
Lambert et al.(2019)
pTH9835 		0.672 0.551
gw1.20.00.89.1
M02535_2.00 		Ostreococcus tauri
WNYWBVWRNW
WNYWBVWRNW		 PBM
Weirauch et al.(2014)
pTH9647 		0.672 0.551
NEMVEDRAFT_v1g111410
M01320_2.00 		Nematostella vectensis
NNNNYRWRN
NYWYRNNNN		 PBM
Lambert et al.(2019)
pTH9771 		0.672 0.536
lin54
M02526_2.00 		Danio rerio
NHTYRAAH
DTTYRADN		 PBM
Weirauch et al.(2014)
pTH8399 		0.672 0.522
GSPATT00010696001
M02530_2.00 		Paramecium tetraurelia
NNBRAAHN
NDTTYVNN		 PBM
Weirauch et al.(2014)
pTH8720 		0.672 0.522
LIN54
M02527_2.00 		Gallus gallus
NRTTYAAAH
DTTTRAAYN		 PBM
Weirauch et al.(2014)
pTH8566 		0.672 0.507
ENSTSYG00000005291
M02528_2.00 		Tarsius syrichta
NNWDHDHWNN
NNWDHDHWNN		 PBM
Weirauch et al.(2014)
pTH9366 		0.672 0.507
SPU_025306
M02531_2.00 		Strongylocentrotus purpuratus
NNNNWYRAAH
DTTYRWNNNN		 PBM
Weirauch et al.(2014)
pTH9286 		0.672 0.507
BGIBMGA008956
M02524_2.00 		Bombyx mori
AATTTAAAW
WTTTAAATT		 PBM
Weirauch et al.(2014)
pTH9238 		0.672 0.478
GE12548
M02529_2.00 		Drosophila yakuba
DTTYAAAY
RTTTRAAH		 PBM
Weirauch et al.(2014)
pTH9262 		0.672 0.478
PK27683.1
M01322_2.00 		Cannabis sativa
NDTTYAAAH
DTTTRAAHN		 PBM
Lambert et al.(2019)
pTH11347 		0.672 0.435
For this family, TFs with SR scores > 0.660 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EPrPV00000019981 TCR/CxC 589 619
EPrPV00000019981 TCR/CxC 695 732

Links

Other TCR/CxC family TFs
Other Pythium vexans TFs

1213 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_25471 Aegilops tauschii F775_25471 I
Bostr.12302s0024 Boechera stricta Bostr.12302s0024 I
BRADI5G25570 Brachypodium distachyon BRADI5G25570 I
BRADI5G21250 Brachypodium distachyon BRADI5G21250 I
Bo1g129710 Brassica oleracea Bo1g129710 I
Bo3g074840 Brassica oleracea Bo3g074840 I
Bo3g143350 Brassica oleracea Bo3g143350 I
Bo7g048170 Brassica oleracea Bo7g048170 I
Bra030095 Brassica rapa Bra030095 I
Bra021594 Brassica rapa Bra021594 I
Bra010880 Brassica rapa Bra010880 I
Bra001784 Brassica rapa Bra001784 I
Eucgr.I00292 Eucalyptus grandis Eucgr.I00292 I
Eucgr.H03088 Eucalyptus grandis Eucgr.H03088 I
GLYMA07G23225 Glycine max GLYMA07G23225 I
Gorai.007G312200 Gossypium raimondii Gorai.007G312200 I
LPERR02G14620 Leersia perrieri LPERR02G14620 I
LPERR04G20430 Leersia perrieri LPERR04G20430 I
LPERR12G03800 Leersia perrieri LPERR12G03800 I
mgf000075m Mimulus guttatus mgf000075m I
GSMUA_Achr6G02310_001 Musa acuminata GSMUA_Achr6G02310_001 I
GSMUA_Achr10G09560_001 Musa acuminata GSMUA_Achr10G09560_001 I
OBART04G25320 Oryza barthii OBART04G25320 I
ORGLA04G0219400 Oryza glaberrima ORGLA04G0219400 I
OGLUM04G24780 Oryza glumaepatula OGLUM04G24780 I
OGLUM04G28860 Oryza glumaepatula OGLUM04G28860 I
BGIOSGA014134 Oryza indica BGIOSGA014134 I
BGIOSGA017088 Oryza indica BGIOSGA017088 I
OMERI04G20480 Oryza meridionalis OMERI04G20480 I
OMERI04G24480 Oryza meridionalis OMERI04G24480 I
ONIVA04G24000 Oryza nivara ONIVA04G24000 I
ONIVA04G27460 Oryza nivara ONIVA04G27460 I
OPUNC04G22340 Oryza punctata OPUNC04G22340 I
ORUFI04G26530 Oryza rufipogon ORUFI04G26530 I
ORUFI04G30650 Oryza rufipogon ORUFI04G30650 I
OS04G0610400 Oryza sativa OS04G0610400 I
OS04G0669200 Oryza sativa OS04G0669200 I
Pavir.Gb00545 Panicum virgatum Pavir.Gb00545 I
Pavir.Gb00092 Panicum virgatum Pavir.Gb00092 I
Pavir.Ga00485 Panicum virgatum Pavir.Ga00485 I
Pavir.Ga00187 Panicum virgatum Pavir.Ga00187 I
Pavir.Ba02999 Panicum virgatum Pavir.Ba02999 N
Si030741m.g Setaria italica Si030741m.g N
Si023330m.g Setaria italica Si023330m.g I
Si010228m.g Setaria italica Si010228m.g I
Sb06g028090 Sorghum bicolor Sb06g028090 I
Sb05g004170 Sorghum bicolor Sb05g004170 I
Traes_2BL_0B09B840B Triticum aestivum Traes_2BL_0B09B840B I
GRMZM2G544539 Zea mays GRMZM2G544539 I
GRMZM2G438202 Zea mays GRMZM2G438202 I
GRMZM2G068967 Zea mays GRMZM2G068967 I
GRMZM2G016434 Zea mays GRMZM2G016434 I