WRKY40 (Arabidopsis lyrata)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03106 (WRKY) IPR003657 fgenesh2_kg.2__2291__AT1G80840.1 T352573_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WRKY40
M02548_2.00 		Arabidopsis thaliana
NRGTCAWN
NWTGACYN		 PBM
Weirauch et al.(2014)
pTH8398 		0.897 1.000
WRKY40
M07379_2.00 		Arabidopsis thaliana
NNNAAAGTCAAVR
YBTTGACTTTNNN		 Dap-seq
OMalley et al.(2016)
WRKY40_colamp_a 		0.897 1.000
WRKY40
M07380_2.00 		Arabidopsis thaliana
NNVAAAGTCAAVRNH
DNYBTTGACTTTBNN		 Dap-seq
OMalley et al.(2016)
WRKY40_col 		0.897 1.000
WRKY40
M08180_2.00 		Arabidopsis thaliana
NNAGTCAANN
NNTTGACTNN		 ChIP-seq
Mathelier et al.(2014)
MA1085.2 		0.897 1.000
WRKY60
M02551_2.00 		Arabidopsis thaliana
NYGGTCAAMNN
NNKTTGACCRN		 PBM
Weirauch et al.(2014)
pTH7379 		0.865 0.814
WRKY18
M02560_2.00 		Arabidopsis thaliana
NNRGTCAANN
NNTTGACYNN		 PBM
Weirauch et al.(2014)
pTH7360 		0.862 0.831
WRKY18
M00900_2.00 		Arabidopsis thaliana
NVGTCNN
NNGACBN		 PBM
Franco-Zorrilla et al.(2014)
WRKY18 		0.862 0.831
WRKY18
M07416_2.00 		Arabidopsis thaliana
NNHRGTCAASR
YSTTGACYDNN		 Dap-seq
OMalley et al.(2016)
WRKY18_col_a 		0.862 0.831
WRKY18
M07417_2.00 		Arabidopsis thaliana
NNNHWAGTCAANR
YNTTGACTWDNNN		 Dap-seq
OMalley et al.(2016)
WRKY18_colamp_a 		0.862 0.831
WRKY18
M11465_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRKY18_Q2 		0.862 0.831
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.2__2291__AT1G80840.1 WRKY 146 204

Links

Other WRKY family TFs
Other Arabidopsis lyrata TFs

599 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSCSAVG00000011823 Ciona savignyi ENSCSAVG00000011823 N
cers4b Danio rerio ENSDARG00000018619 N
ECANG7_08951 Echinococcus canadensis ECANG7_08951 N
EmuJ_001184400 Echinococcus multilocularis EmuJ_001184400 N
ENSLOCG00000004390 Lepisosteus oculatus ENSLOCG00000004390 N
ENSSHAG00000001747 Sarcophilus harrisii ENSSHAG00000001747 N
ENSSHAG00000003870 Sarcophilus harrisii ENSSHAG00000003870 N
Smp_042440 Schistosoma mansoni Smp_042440 N
SMRZ_0001121101 Schistosoma margrebowiei SMRZ_0001121101 N
SMTD_0001890201 Schistosoma mattheei SMTD_0001890201 N
SROB_0002172301 Schistosoma rodhaini SROB_0002172301 N
cers4b Takifugu rubripes ENSTRUG00000000191 N