CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

MTR_2g045360 *(Medicago truncatula)* WRKY
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03106 (WRKY)	IPR003657	MTR_2g045360	T353249_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
WRKY6 M07377_2.00	Arabidopsis thaliana	DNNNHNDHNHNRGTCAACG	CGTTGACYNDNDHNDNNNH	Dap-seq OMalley et al.(2016) WRKY6_col_a	0.882	0.814
WRKY6 M07378_2.00	Arabidopsis thaliana	NNHNWRGTCAACKNH	DNMGTTGACYWNDNN	Dap-seq OMalley et al.(2016) WRKY6_colamp_a	0.882	0.814
WRKY42 M07404_2.00	Arabidopsis thaliana	NDWRGTCAACDNNNNDNNHNN	NNDNNHNNNNHGTTGACYWHN	Dap-seq OMalley et al.(2016) WRKY42_col_a	0.872	0.780
WRKY42 M07405_2.00	Arabidopsis thaliana	HNDNNNWRGTCAACKNHNDD	HHNDNMGTTGACYWNNNHND	Dap-seq OMalley et al.(2016) WRKY42_colamp_a	0.872	0.780
WRKY31 M07408_2.00	Arabidopsis thaliana	NNNNHNNNNNDRGTCAACG	CGTTGACYHNNNNNDNNNN	Dap-seq OMalley et al.(2016) WRKY31_col_a	0.871	0.797
WRKY31 M07409_2.00	Arabidopsis thaliana	NHWRGTCAACKNH	DNMGTTGACYWDN	Dap-seq OMalley et al.(2016) WRKY31_colamp_a	0.871	0.797
WRKY47 M00732_2.00	Arabidopsis thaliana	NNRGTCAACKN	NMGTTGACYNN	PBM Chang et al.(2013) pTH7913	0.870	0.763
WRKY47 M07402_2.00	Arabidopsis thaliana	WRGTCAAMGNHVDK	MHBDNCKTTGACYW	Dap-seq OMalley et al.(2016) WRKY47_col_a	0.870	0.763
WRKY47 M07403_2.00	Arabidopsis thaliana	NNNHWRGTCAACKNHNNNN	NNNNDNMGTTGACYWDNNN	Dap-seq OMalley et al.(2016) WRKY47_colamp_a	0.870	0.763
For this family, TFs with SR scores > 0.808* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
AES65682	WRKY	211	269	VDGCQWRKYGQKTAKGNPCPRAYYRCSMGTSCPVRKQVQRCFKDESVFITTYEGNHNHQ

Links
Other WRKY family TFs
Other *Medicago truncatula* TFs

607 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
F775_10178	Aegilops tauschii	F775_10178	N
MLOC_51817	Hordeum vulgare	MLOC_51817	N
OBART02G37310	Oryza barthii	OBART02G37310	N
ORGLA02G0325300	Oryza glaberrima	ORGLA02G0325300	N
OGLUM02G38450	Oryza glumaepatula	OGLUM02G38450	N
BGIOSGA009295	Oryza indica	BGIOSGA009295	N
OLONG_013731	Oryza longistaminata	OLONG_013731	N
OMERI02G35090	Oryza meridionalis	OMERI02G35090	N
ONIVA02G40070	Oryza nivara	ONIVA02G40070	N
OPUNC02G34470	Oryza punctata	OPUNC02G34470	N
ORUFI02G38810	Oryza rufipogon	ORUFI02G38810	N
Pavir.Ab03236	Panicum virgatum	Pavir.Ab03236	N
Traes_6AL_6E9EB1143	Triticum aestivum	Traes_6AL_6E9EB1143	N
Traes_6BL_70715AAF9	Triticum aestivum	Traes_6BL_70715AAF9	N
Traes_6DL_917D35DED	Triticum aestivum	Traes_6DL_917D35DED	N
TRIUR3_25071	Triticum urartu	TRIUR3_25071	N