15982_YLR228C (Saccharomyces paradoxus)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00172 (Zn_clus) IPR001138 15982_YLR228C T390778_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ECM22
M00096_2.00 		Saccharomyces cerevisiae
NNCSGRDNHN
NDNHYCSGNN		 PBM
Badis et al.(2008)
ECM22_2066 		0.683 1.000
ECM22
M00924_2.00 		Saccharomyces cerevisiae
NNDWACGRN
NYCGTWHNN		 PBM
Gordan et al.(2011)
Ecm22 		0.683 1.000
ECM22
M01589_2.00 		Saccharomyces cerevisiae
NNNCGGVN
NBCCGNNN		 PBM
Zhu et al.(2009)
Ecm22 		0.683 1.000
ECM22
M07522_2.00 		Saccharomyces cerevisiae
TCCGGAD
HTCCGGA		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0292.1 		0.683 1.000
ECM22
M08679_2.00 		Saccharomyces cerevisiae
NNYCGGRNNDMCGGAVNH
DNBTCCGKHNNYCCGRNN		 Misc
DeBoer et al.(2011)
YLR228C_849 		0.683 1.000
UPC2
M00920_2.00 		Saccharomyces cerevisiae
NTCGTWYVN
NBRWACGAN		 PBM
Gordan et al.(2011)
Upc2 		0.541 0.675
UPC2
M07508_2.00 		Saccharomyces cerevisiae
NRWACGA
TCGTWYN		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0411.1 		0.541 0.675
UPC2
M08654_2.00 		Saccharomyces cerevisiae
NRWACGA
TCGTWYN		 Misc
DeBoer et al.(2011)
YDR213W_544 		0.541 0.675
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
15982_YLR228C Zinc cluster 42 81

Links

Other Zinc cluster family TFs
Other Saccharomyces paradoxus TFs

11 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000019898 Ailuropoda melanoleuca ENSAMEG00000019898 N 0.000
Alligator_sinensis_CCG009248.1 Alligator sinensis Alligator_sinensis_CCG009248.1 N 0.000
ENSAPLG00000002179 Anas platyrhynchos ENSAPLG00000002179 N 0.000
ENSACAG00000007731 Anolis carolinensis ENSACAG00000007731 N 0.000
Afo_R002601 Aptenodytes forsteri Afo_R002601 N 0.000
ENSAMXG00000012827 Astyanax mexicanus ENSAMXG00000012827 N 0.000
ENSP00000379054-D1 Bos grunniens ENSP00000379054-D1 N 0.000
Brh_R006725 Buceros rhinoceros Brh_R006725 N 0.000
ZNF488 Cavia porcellus ENSCPOG00000000536 N 0.000
Cmyd_10007742 Chelonia mydas Cmyd_10007742 N 0.000
ZNF488 Equus caballus ENSECAG00000004188 N 0.000
ZNF488 Felis catus ENSFCAG00000008960 N 0.000
ENSFALG00000007449 Ficedula albicollis ENSFALG00000007449 N 0.000
ENSGALG00000005975 Gallus gallus ENSGALG00000005975 N 0.000
prdm8 Gasterosteus aculeatus ENSGACG00000007142 N 0.000
Gfo_R002431 Geospiza fortis Gfo_R002431 N 0.000
ZNF488 Homo sapiens ENSG00000265763 N 0.000
ENSSTOG00000015147 Ictidomys tridecemlineatus ENSSTOG00000015147 N 0.000
ENSLACG00000016046 Latimeria chalumnae ENSLACG00000016046 N 0.000
ENSLOCG00000003895 Lepisosteus oculatus ENSLOCG00000003895 N 0.000
ENSP00000379054 Macaca fascicularis ENSP00000379054 N 0.000
ENSMODG00000025038 Monodelphis domestica ENSMODG00000025038 N 0.000
Myotis_brandtii_ZNF488_10008743 Myotis brandtii Myotis_brandtii_ZNF488_10008743 N 0.000
ZNF488 Myotis lucifugus ENSMLUG00000030552 N 0.000
ENSNLEG00000015447 Nomascus leucogenys ENSNLEG00000015447 N 0.000
ENSONIG00000009552 Oreochromis niloticus ENSONIG00000009552 N 0.000
ZNF488 Ornithorhynchus anatinus ENSOANG00000015412 N 0.000
prdm8 Oryzias latipes ENSORLG00000008745 N 0.000
ZNF488 Otolemur garnettii ENSOGAG00000001742 N 0.000
ENSPFOG00000004161 Poecilia formosa ENSPFOG00000004161 N 0.000
ENSSHAG00000015538 Sarcophilus harrisii ENSSHAG00000015538 N 0.000
ENSSSCG00000010373 Sus scrofa ENSSSCG00000010373 N 0.000
ENSTGUG00000008050 Taeniopygia guttata ENSTGUG00000008050 N 0.000
prdm8 Takifugu rubripes ENSTRUG00000012560 N 0.000
prdm8 Tetraodon nigroviridis ENSTNIG00000016524 N 0.000
ZNF488 Tupaia belangeri ENSTBEG00000016364 N 0.000
ENSXMAG00000014518 Xiphophorus maculatus ENSXMAG00000014518 N 0.000