20556_YOR380W (Saccharomyces mikatae)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00172 (Zn_clus) IPR001138 20556_YOR380W T390808_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RDR1
M00108_2.00 		Saccharomyces cerevisiae
DCGGRWN
NWYCCGH		 PBM
Badis et al.(2008)
RDR1_2112 		0.551 0.737
RDR1
M01597_2.00 		Saccharomyces cerevisiae
NCGGRWNN
NNWYCCGN		 PBM
Zhu et al.(2009)
Rdr1 		0.551 0.737
RDR1
M07535_2.00 		Saccharomyces cerevisiae
WGCGGAAN
NTTCCGCW		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0360.1 		0.551 0.737
RDR1
M08694_2.00 		Saccharomyces cerevisiae
WTCCGCGGAR
YTCCGCGGAW		 Misc
DeBoer et al.(2011)
YOR380W_756 		0.551 0.737
RDR1
M08695_2.00 		Saccharomyces cerevisiae
NNNNNNNNGCGGAWANNNNNB
VNNNNNTWTCCGCNNNNNNNN		 Misc
DeBoer et al.(2011)
YOR380W_843 		0.551 0.737
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
20556_YOR380W Zinc cluster 18 55

Links

Other Zinc cluster family TFs
Other Saccharomyces mikatae TFs

5 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TBS1 Saccharomyces cerevisiae YBR150C D
SKUD_205109 Saccharomyces kudriavzevii SKUD_205109 I
676_Multiple Saccharomyces mikatae 676_Multiple I
1615_YBR150C Saccharomyces paradoxus 1615_YBR150C I