Sb09g021540 (Sorghum bicolor)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Sb09g021540 T005061_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-6
M00717_2.00 		Arabidopsis thaliana
NBGCYGNH
DNCRGCVN		 PBM
Chang et al.(2013)
pTH7225 		0.688 0.714
RAP2-6
M00841_2.00 		Arabidopsis thaliana
NGCCGHHNNN
NNNDDCGGCN		 PBM
Franco-Zorrilla et al.(2014)
RAP2.6 		0.688 0.714
RAP2-6
M06579_2.00 		Arabidopsis thaliana
HHDYCKCCGCCGYMD
HKRCGGCGGMGRHDD		 Dap-seq
OMalley et al.(2016)
RAP26_col_a 		0.688 0.714
RAP2-6
M06580_2.00 		Arabidopsis thaliana
CGCCGY
RCGGCG		 Dap-seq
OMalley et al.(2016)
RAP26_colamp_a 		0.688 0.714
ERF115
M06657_2.00 		Arabidopsis thaliana
CCGCCGYMRYHDCCR
YGGHDRYKRCGGCGG		 Dap-seq
OMalley et al.(2016)
ERF115_col_a 		0.677 0.694
ERF115
M06658_2.00 		Arabidopsis thaliana
CKCCGCCGYMRYHDY
RHDRYKRCGGCGGMG		 Dap-seq
OMalley et al.(2016)
ERF115_colamp_a 		0.677 0.694
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb09g021540.1 AP2 64 115

Links

Other AP2 family TFs
Other Sorghum bicolor TFs

178 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_001301 Theobroma cacao TCM_001301 I 0.744
ERF110 Arabidopsis lyrata fgenesh2_kg.8__881__AT5G50080.1 I 0.744
ERF110 Arabidopsis thaliana AT5G50080 I 0.744
POPTR_0007s07090 Populus trichocarpa POPTR_0007s07090 I 0.736
GLYMA06G15341 Glycine max GLYMA06G15341 I 0.735
Bostr.15774s0146 Boechera stricta Bostr.15774s0146 I 0.735
LPERR05G14130 Leersia perrieri LPERR05G14130 I 0.733
GRMZM2G457562 Zea mays GRMZM2G457562 I 0.733
OPUNC05G15760 Oryza punctata OPUNC05G15760 I 0.733
OPUNC11G03940 Oryza punctata OPUNC11G03940 I 0.733
Lus10028679.g Linum usitatissimum Lus10028679.g I 0.733
Cagra.14503s0008 Capsella grandiflora Cagra.14503s0008 I 0.733
ERF110 Vitis vinifera VIT_18s0072g00260 I 0.732
Pavir.J02402 Panicum virgatum Pavir.J02402 I 0.732
MDP0000242979 Malus domestica MDP0000242979 I 0.732
SapurV1A.0134s0150 Salix purpurea SapurV1A.0134s0150 I 0.732
Eucgr.F04203 Eucalyptus grandis Eucgr.F04203 I 0.732
Ciclev10001138m.g Citrus clementina Ciclev10001138m.g I 0.732
Gorai.010G131500 Gossypium raimondii Gorai.010G131500 I 0.732
evm.TU.supercontig_49.94 Carica papaya evm.TU.supercontig_49.94 I 0.732
Gorai.005G078100 Gossypium raimondii Gorai.005G078100 I 0.732
Carubv10028647m.g Capsella rubella Carubv10028647m.g I 0.732
Cucsa.363830 Cucumis sativus Cucsa.363830 I 0.732
Pm022509 Prunus mume Pm022509 I 0.732
GLYMA20G30835 Glycine max GLYMA20G30835 I 0.732
29863.m001066 Ricinus communis 29863.m001066 I 0.732
cassava12737.valid.m1 Manihot esculenta cassava12737.valid.m1 I 0.732
Cla014021 Citrullus lanatus Cla014021 I 0.732
MDP0000235028 Malus domestica MDP0000235028 I 0.732
GLYMA10G36760 Glycine max GLYMA10G36760 I 0.732
orange1.1g013225m.g Citrus sinensis orange1.1g013225m.g I 0.732
Cucsa.250290 Cucumis sativus Cucsa.250290 I 0.730
ABR1 Vitis vinifera VIT_07s0031g01980 I 0.730
ONIVA11G04340 Oryza nivara ONIVA11G04340 I 0.726
ORGLA11G0040400 Oryza glaberrima ORGLA11G0040400 I 0.726
ORUFI11G04200 Oryza rufipogon ORUFI11G04200 I 0.726
OS11G0168500 Oryza sativa OS11G0168500 I 0.726
BGIOSGA034432 Oryza indica BGIOSGA034432 I 0.726
OGLUM11G04050 Oryza glumaepatula OGLUM11G04050 I 0.726
Gorai.008G075600 Gossypium raimondii Gorai.008G075600 I 0.726
TCM_035671 Theobroma cacao TCM_035671 I 0.725
chr5.CM0052.240.nd Lotus japonicus chr5.CM0052.240.nd I 0.725
POPTR_0002s06620 Populus trichocarpa POPTR_0002s06620 I 0.725
Gorai.009G255400 Gossypium raimondii Gorai.009G255400 I 0.725
Thhalv10014579m.g Eutrema salsugineum Thhalv10014579m.g I 0.724
mgf000075m Mimulus guttatus mgf000075m I 0.724
Solyc12g056590.1 Solanum lycopersicum Solyc12g056590.1 I 0.723
Eucgr.F02691 Eucalyptus grandis Eucgr.F02691 I 0.723
LPERR11G03740 Leersia perrieri LPERR11G03740 I 0.723
PGSC0003DMG400018803 Solanum tuberosum PGSC0003DMG400018803 I 0.723
GLYMA16G27950 Glycine max GLYMA16G27950 I 0.723
GLYMA02G08835 Glycine max GLYMA02G08835 I 0.723
MTR_6g037610 Medicago truncatula MTR_6g037610 I 0.723
Ca_19135 Cicer arietinum Ca_19135 I 0.723
BRADI2G56140 Brachypodium distachyon BRADI2G56140 I 0.723
chr2.LjT11L13.40.nc Lotus japonicus chr2.LjT11L13.40.nc I 0.723
Solyc04g071770.2 Solanum lycopersicum Solyc04g071770.2 I 0.722
PGSC0003DMG400006369 Solanum tuberosum PGSC0003DMG400006369 I 0.722
Pavir.J03755 Panicum virgatum Pavir.J03755 I 0.720
BRADI2G24170 Brachypodium distachyon BRADI2G24170 I 0.720
POPTR_0005s21690 Populus trichocarpa POPTR_0005s21690 I 0.720
Si002010m.g Setaria italica Si002010m.g I 0.720
BGIOSGA000428 Oryza indica BGIOSGA000428 I 0.720
GRMZM2G100727 Zea mays GRMZM2G100727 I 0.720
Pavir.Ea03713 Panicum virgatum Pavir.Ea03713 I 0.720
BGIOSGA019928 Oryza indica BGIOSGA019928 I 0.720
Sb05g004170 Sorghum bicolor Sb05g004170 I 0.720
GRMZM2G149756 Zea mays GRMZM2G149756 I 0.720
LPERR01G33110 Leersia perrieri LPERR01G33110 I 0.720
ONIVA01G43260 Oryza nivara ONIVA01G43260 I 0.720
ONIVA05G18720 Oryza nivara ONIVA05G18720 I 0.720
OGLUM01G42800 Oryza glumaepatula OGLUM01G42800 I 0.720
OMERI01G35460 Oryza meridionalis OMERI01G35460 I 0.720
ORGLA05G0154400 Oryza glaberrima ORGLA05G0154400 I 0.720
ORGLA01G0324200 Oryza glaberrima ORGLA01G0324200 I 0.720
MLOC_7891 Hordeum vulgare MLOC_7891 I 0.720
OS05G0437100 Oryza sativa OS05G0437100 I 0.720
ORUFI05G19030 Oryza rufipogon ORUFI05G19030 I 0.720
OS01G0868000 Oryza sativa OS01G0868000 I 0.720
ORUFI01G41960 Oryza rufipogon ORUFI01G41960 I 0.720
cassava19042.valid.m1 Manihot esculenta cassava19042.valid.m1 I 0.719
MTR_1g098460 Medicago truncatula MTR_1g098460 I 0.719
cassava19043.valid.m1 Manihot esculenta cassava19043.valid.m1 I 0.719
Cla007885 Citrullus lanatus Cla007885 I 0.719
gene27604-v1.0-hybrid Fragaria vesca gene27604-v1.0-hybrid I 0.719
GRMZM2G076896 Zea mays GRMZM2G076896 I 0.718
Cla003851 Citrullus lanatus Cla003851 I 0.718
Cucsa.365850 Cucumis sativus Cucsa.365850 I 0.718
Pavir.Cb02005 Panicum virgatum Pavir.Cb02005 I 0.717
Pavir.J04335 Panicum virgatum Pavir.J04335 I 0.717
Pavir.Hb01784 Panicum virgatum Pavir.Hb01784 I 0.715
Si026709m.g Setaria italica Si026709m.g I 0.715
Pavir.Ha01720 Panicum virgatum Pavir.Ha01720 I 0.715
Ca_18387 Cicer arietinum Ca_18387 I 0.712
Ca_04370 Cicer arietinum Ca_04370 I 0.712
LPERR12G03800 Leersia perrieri LPERR12G03800 I 0.711
Cla019618 Citrullus lanatus Cla019618 I 0.709
Cucsa.156890 Cucumis sativus Cucsa.156890 I 0.709
Eucgr.G01970 Eucalyptus grandis Eucgr.G01970 I 0.709
SapurV1A.0327s0220 Salix purpurea SapurV1A.0327s0220 I 0.709
Ciclev10032575m.g Citrus clementina Ciclev10032575m.g I 0.708
30147.m014403 Ricinus communis 30147.m014403 I 0.708
orange1.1g036963m.g Citrus sinensis orange1.1g036963m.g I 0.708
Pavir.J17038 Panicum virgatum Pavir.J17038 I 0.707
Solyc12g042210.1 Solanum lycopersicum Solyc12g042210.1 I 0.707
evm.TU.supercontig_13.175 Carica papaya evm.TU.supercontig_13.175 I 0.706
Ciclev10003903m.g Citrus clementina Ciclev10003903m.g I 0.705
orange1.1g005229m.g Citrus sinensis orange1.1g005229m.g I 0.705
mgf019280m Mimulus guttatus mgf019280m I 0.704
cassava10717.m1 Manihot esculenta cassava10717.m1 I 0.703
GRMZM2G544539 Zea mays GRMZM2G544539 I 0.703
Aquca_043_00039 Aquilegia coerulea Aquca_043_00039 I 0.702
Lus10022426.g Linum usitatissimum Lus10022426.g I 0.702
GSMUA_Achr6G25680_001 Musa acuminata GSMUA_Achr6G25680_001 I 0.701
AMTR_s00017p00232330 Amborella trichopoda AMTR_s00017p00232330 I 0.701
GSMUA_Achr10G09560_001 Musa acuminata GSMUA_Achr10G09560_001 I 0.700
Aquca_023_00168 Aquilegia coerulea Aquca_023_00168 I 0.700
GSMUA_Achr6G18020_001 Musa acuminata GSMUA_Achr6G18020_001 I 0.697
MTR_6g033255 Medicago truncatula MTR_6g033255 I 0.697
Cucsa.349200 Cucumis sativus Cucsa.349200 I 0.697
Cla007205 Citrullus lanatus Cla007205 I 0.697
Cagra.3842s0001 Capsella grandiflora Cagra.3842s0001 I 0.696
Carubv10010478m.g Capsella rubella Carubv10010478m.g I 0.696
cassava19959.m1 Manihot esculenta cassava19959.m1 I 0.695
POPTR_0012s11030 Populus trichocarpa POPTR_0012s11030 I 0.695
gene06407-v1.0-hybrid Fragaria vesca gene06407-v1.0-hybrid I 0.695
GLYMA16G26320 Glycine max GLYMA16G26320 I 0.695
SapurV1A.0517s0130 Salix purpurea SapurV1A.0517s0130 I 0.695
GLYMA02G07310 Glycine max GLYMA02G07310 I 0.695
chr1.CM0094.670.nd Lotus japonicus chr1.CM0094.670.nd I 0.695
TCM_014762 Theobroma cacao TCM_014762 I 0.695
GLYMA06G17180 Glycine max GLYMA06G17180 I 0.695
Ca_01387 Cicer arietinum Ca_01387 I 0.694
Lus10005805.g Linum usitatissimum Lus10005805.g I 0.694
MTR_3g098580 Medicago truncatula MTR_3g098580 I 0.694
Lus10006796.g Linum usitatissimum Lus10006796.g I 0.694
SapurV1A.0826s0010 Salix purpurea SapurV1A.0826s0010 I 0.694
Bostr.12302s0024 Boechera stricta Bostr.12302s0024 I 0.694
MDP0000894895 Malus domestica MDP0000894895 I 0.692
Bo3g004290 Brassica oleracea Bo3g004290 I 0.692
chr4.CM0175.50.nd Lotus japonicus chr4.CM0175.50.nd I 0.691
GSMUA_Achr6G02310_001 Musa acuminata GSMUA_Achr6G02310_001 I 0.690
Cucsa.101370 Cucumis sativus Cucsa.101370 I 0.690
chr1.CM1880.220.nd Lotus japonicus chr1.CM1880.220.nd I 0.690
cassava45576.m1 Manihot esculenta cassava45576.m1 I 0.690
30131.m006971 Ricinus communis 30131.m006971 I 0.690
TCM_017352 Theobroma cacao TCM_017352 I 0.689
Gorai.008G210600 Gossypium raimondii Gorai.008G210600 I 0.689
GLYMA19G27790 Glycine max GLYMA19G27790 I 0.689
GLYMA16G05190 Glycine max GLYMA16G05190 I 0.689
Bra028703 Brassica rapa Bra028703 I 0.689
Cla008608 Citrullus lanatus Cla008608 I 0.689
PGSC0003DMG400019693 Solanum tuberosum PGSC0003DMG400019693 I 0.689
Bra009272 Brassica rapa Bra009272 I 0.688
Bo9g175390 Brassica oleracea Bo9g175390 I 0.688
RAP2-6 Arabidopsis thaliana AT1G43160 D 0.688
Thhalv10015583m.g Eutrema salsugineum Thhalv10015583m.g I 0.688
fgenesh2_kg.6__690__AT5G07310.1 Arabidopsis lyrata fgenesh2_kg.6__690__AT5G07310.1 I 0.688
Bostr.13129s0235 Boechera stricta Bostr.13129s0235 I 0.688
Cagra.2662s0009 Capsella grandiflora Cagra.2662s0009 I 0.688
Carubv10002723m.g Capsella rubella Carubv10002723m.g I 0.688
Bo2g008570 Brassica oleracea Bo2g008570 I 0.687
Eucgr.I00292 Eucalyptus grandis Eucgr.I00292 I 0.687
VIT_14s0068g01040 Vitis vinifera VIT_14s0068g01040 I 0.685
Bra005932 Brassica rapa Bra005932 I 0.685
Ciclev10018158m.g Citrus clementina Ciclev10018158m.g I 0.684
Gorai.008G100500 Gossypium raimondii Gorai.008G100500 I 0.682
Bra030095 Brassica rapa Bra030095 I 0.682
RRTF1 Vitis vinifera VIT_03s0063g00460 I 0.682
Bo7g048170 Brassica oleracea Bo7g048170 I 0.682
PRUPE_ppa008772mg Prunus persica PRUPE_ppa008772mg I 0.682
Pm024604 Prunus mume Pm024604 I 0.680
MLOC_68290 Hordeum vulgare MLOC_68290 I 0.679
Traes_5BS_80C46D9C4 Triticum aestivum Traes_5BS_80C46D9C4 I 0.679
Gorai.007G045100 Gossypium raimondii Gorai.007G045100 I 0.679
VIT_07s0031g00710 Vitis vinifera VIT_07s0031g00710 I 0.679
Traes_5BL_60FC12DA6 Triticum aestivum Traes_5BL_60FC12DA6 I 0.679
ERF115 Arabidopsis thaliana AT5G07310 D 0.677