CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bostr.23794s0446
(
Boechera stricta
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Bostr.23794s0446
T007604_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF024
M01614_2.00
Arabidopsis thaliana
NNRCCGHCN
NGDCGGYNN
PBM
Weirauch et al.(2014)
pTH8206
0.804
0.941
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bostr.23794s0446.1.p
AP2
13
65
PLYKGVRQRKNSDKWVSEIREPRKPNRIWLGTFSTPEMAAIAYDVAALALKGT
Links
Other
AP2
family TFs
Other
Boechera stricta
TFs
12 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo4g034600
Brassica oleracea
Bo4g034600
I
0.826
HRD
Arabidopsis lyrata
scaffold_402264.1
I
0.812
ERF024
Arabidopsis thaliana
AT2G36450
D
0.804
Bra017235
Brassica rapa
Bra017235
I
0.790
Cagra.0228s0035
Capsella grandiflora
Cagra.0228s0035
I
0.790
Carubv10024954m.g
Capsella rubella
Carubv10024954m.g
I
0.790
Thhalv10017537m.g
Eutrema salsugineum
Thhalv10017537m.g
I
0.773
Bo4g186300
Brassica oleracea
Bo4g186300
I
0.770
Bo3g030140
Brassica oleracea
Bo3g030140
I
0.766
Bra023070
Brassica rapa
Bra023070
I
0.766
Solyc10g083560.1
Solanum lycopersicum
Solyc10g083560.1
I
0.696
PGSC0003DMG400045042
Solanum tuberosum
PGSC0003DMG400045042
I
0.694