Cagra.1822s0022 (Capsella grandiflora)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cagra.1822s0022 T007747_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF11
M01606_2.00 		Arabidopsis thaliana
NHGCCGNHNN
NNDNCGGCDN		 PBM
Weirauch et al.(2014)
pTH8117 		0.702 0.941
ERF11
M06575_2.00 		Arabidopsis thaliana
NHNNHDSCGCCGYCRHHNNN
NNNDDYGRCGGCGSHDNNDN		 Dap-seq
OMalley et al.(2016)
ERF11_colamp_a 		0.702 0.941
ERF11
M06576_2.00 		Arabidopsis thaliana
NHNYCKCCGCCGYHD
HDRCGGCGGMGRNDN		 Dap-seq
OMalley et al.(2016)
ERF11_col_b 		0.702 0.941
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1822s0022.1.p AP2 18 69

Links

Other AP2 family TFs
Other Capsella grandiflora TFs

2 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10011676m.g Capsella rubella Carubv10011676m.g I 0.820
ERF11 Arabidopsis thaliana AT1G28370 D 0.702