Carubv10021118m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10021118m.g T007903_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF069
M01604_2.00 		Arabidopsis thaliana
NNGCCGNNN
NNNCGGCNN		 PBM
Weirauch et al.(2014)
pTH7550 		0.740 0.830
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10021118m AP2 76 129

Links

Other AP2 family TFs
Other Capsella rubella TFs

5 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0147s0032 Capsella grandiflora Cagra.0147s0032 I 0.898
ERF070 Arabidopsis thaliana AT1G71130 N 0.753
fgenesh2_kg.2__1375__AT1G71130.1 Arabidopsis lyrata fgenesh2_kg.2__1375__AT1G71130.1 N 0.752
ERF069 Arabidopsis thaliana AT1G22985 D 0.740
Bostr.10273s0232 Boechera stricta Bostr.10273s0232 N 0.735