CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Da01882
(
Panicum virgatum
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Pavir.Da01882
T009406_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Da01882.1.p
AP2
19
70
RSYKGVRLRKWGRWVSEIRLPNSRERIWLGSYDAPEMAARAFDAAYLCLRGP
Links
Other
AP2
family TFs
Other
Panicum virgatum
TFs
6 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Si008104m.g
Setaria italica
Si008104m.g
I
0.716
PGSC0003DMG400030781
Solanum tuberosum
PGSC0003DMG400030781
I
0.689
Solyc06g054630.1
Solanum lycopersicum
Solyc06g054630.1
I
0.689
MTR_3g105480
Medicago truncatula
MTR_3g105480
I
0.680
MTR_3g105510
Medicago truncatula
MTR_3g105510
I
0.680
Eucgr.C03175
Eucalyptus grandis
Eucgr.C03175
I
0.680