CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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EFV52712
(
Trichinella spiralis
)
AP-2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03299 (TF_AP-2)
IPR013854
EFV52712
T010723_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Tfap2b
M00112_2.00
Mus musculus
CCBSRGGSNW
WNSCCYSVGG
PBM
Badis et al.(2009)
Tcfap2b_3988
0.801
0.801
TFAP2B
M02753_2.00
Homo sapiens
HSCCYBVRGGCD
HGCCYBVRGGSD
SELEX
Jolma et al.(2013)
TFAP2B_1
0.801
0.801
TFAP2B
M02754_2.00
Homo sapiens
HGCCTSRGGCD
HGCCYSAGGCD
SELEX
Jolma et al.(2013)
TFAP2B_2
0.801
0.801
TFAP2B
M02755_2.00
Homo sapiens
WGCCCYBVRGGCD
HGCCYBVRGGGCW
SELEX
Jolma et al.(2013)
TFAP2B_3
0.801
0.801
TFAP2B
M04046_2.00
Homo sapiens
NSCCBNVGGSN
NSCCBNVGGSN
SELEX
Yin et al.(2017)
TFAP2B_eDBD_HT-SELEX
0.801
0.801
TFAP2B
M08701_2.00
Homo sapiens
GSCYGVGGRV
BYCCBCRGSC
Misc
Kulakovskiy et al.(2013)
AP2B_HUMAN.H11MO.0.B
0.801
0.801
Tfap2b
M08705_2.00
Mus musculus
GSCYGVGGRV
BYCCBCRGSC
Misc
Kulakovskiy et al.(2013)
AP2B_MOUSE.H11MO.0.B
0.801
0.801
TFAP2B
M09750_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AP2BETA_Q3
0.801
0.801
TFAP2B
M04047_2.00
Homo sapiens
NSCCYNRGGSD
HSCCYNRGGSN
SELEX
Yin et al.(2017)
TFAP2B_eDBD_Methyl-HT-SELEX
0.801
0.801
TFAP2E
M04050_2.00
Homo sapiens
HSCCYSRGGSD
HSCCYSRGGSD
SELEX
Yin et al.(2017)
TFAP2E_FL_HT-SELEX_1
0.787
0.787
TFAP2E
M04051_2.00
Homo sapiens
NSCCBBVGGSCA
TGSCCBVVGGSN
SELEX
Yin et al.(2017)
TFAP2E_FL_HT-SELEX_2
0.787
0.787
TFAP2E
M04052_2.00
Homo sapiens
HSCCYSRGGSD
HSCCYSRGGSD
SELEX
Yin et al.(2017)
TFAP2E_FL_Methyl-HT-SELEX_1
0.787
0.787
TFAP2E
M04053_2.00
Homo sapiens
NSCCYNRGGGCR
YGCCCYNRGGSN
SELEX
Yin et al.(2017)
TFAP2E_FL_Methyl-HT-SELEX_2
0.787
0.787
Tfap2a
M00111_2.00
Mus musculus
HSCCBNVRGS
SCYBNVGGSD
PBM
Badis et al.(2009)
Tcfap2a_2337
0.779
0.779
Tfap2e
M00114_2.00
Mus musculus
NNGCCYBVGG
CCBVRGGCNN
PBM
Badis et al.(2009)
Tcfap2e_3713
0.779
0.779
TFAP2A
M02762_2.00
Homo sapiens
HGCCYBVRGGSD
HSCCYBVRGGCD
SELEX
Jolma et al.(2013)
TFAP2A_1
0.779
0.779
TFAP2A
M02763_2.00
Homo sapiens
HGCCYSMGGCN
NGCCKSRGGCD
SELEX
Jolma et al.(2013)
TFAP2A_2
0.779
0.779
TFAP2A
M02764_2.00
Homo sapiens
NSCCCBNVRGGSN
NSCCYBNVGGGSN
SELEX
Jolma et al.(2013)
TFAP2A_3
0.779
0.779
TFAP2A
M02765_2.00
Homo sapiens
HGCCTSRGGCD
HGCCYSAGGCD
SELEX
Jolma et al.(2013)
TFAP2A_4
0.779
0.779
TFAP2A
M02766_2.00
Homo sapiens
HGCCYBVRGGCD
HGCCYBVRGGCD
SELEX
Jolma et al.(2013)
TFAP2A_5
0.779
0.779
TFAP2A
M02767_2.00
Homo sapiens
WGCCCYNVGGGCD
HGCCCBNRGGGCW
SELEX
Jolma et al.(2013)
TFAP2A_6
0.779
0.779
Tfap2a
M02768_2.00
Mus musculus
HGCCYBVRGGCR
YGCCYBVRGGCD
SELEX
Jolma et al.(2013)
Tcfap2a_1
0.779
0.779
Tfap2a
M02769_2.00
Mus musculus
HGCCTSRGGCD
HGCCYSAGGCD
SELEX
Jolma et al.(2013)
Tcfap2a_2
0.779
0.779
Tfap2a
M02770_2.00
Mus musculus
WGCCCYBVGGGCD
HGCCCBVRGGGCW
SELEX
Jolma et al.(2013)
Tcfap2a_3
0.779
0.779
TFAP2A
M04054_2.00
Homo sapiens
NGCCBSVGGCN
NGCCBSVGGCN
SELEX
Yin et al.(2017)
TFAP2A_FL_HT-SELEX
0.779
0.779
TFAP2A
M07784_2.00
Homo sapiens
NBNSCCYSRGGSCWN
NWGSCCYSRGGSNVN
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_AP2ALPHA_UCD
0.779
0.779
TFAP2A
M08703_2.00
Homo sapiens
NHDSCCYCAGGSHWN
NWDSCCTGRGGSHDN
Misc
Kulakovskiy et al.(2013)
AP2A_HUMAN.H11MO.0.A
0.779
0.779
Tfap2a
M08704_2.00
Mus musculus
SCCYCRGGSNNN
NNNSCCYGRGGS
Misc
Kulakovskiy et al.(2013)
AP2A_MOUSE.H11MO.0.A
0.779
0.779
TFAP2A
M09755_2.00
Homo sapiens
GCCBBVVGS
SCBBVVGGC
Transfac
Matys et al.(2006)
V$AP2ALPHA_01
0.779
0.779
TFAP2A
M09756_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AP2ALPHA_02
0.779
0.779
TFAP2A
M09757_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AP2ALPHA_03
0.779
0.779
TFAP2A
M09758_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AP2ALPHA_Q4
0.779
0.779
TFAP2A
M09759_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AP2ALPHA_Q6
0.779
0.779
TFAP2A
M09760_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TFAP2A_09
0.779
0.779
TFAP2A
M04055_2.00
Homo sapiens
NSCCTNAGGSN
NSCCTNAGGSN
SELEX
Yin et al.(2017)
TFAP2A_FL_Methyl-HT-SELEX
0.779
0.779
TFAP2C
M02756_2.00
Homo sapiens
HSCCYBVRGGCD
HGCCYBVRGGSD
SELEX
Jolma et al.(2013)
TFAP2C_1
0.765
0.765
TFAP2C
M02757_2.00
Homo sapiens
HGCCTBRGGCD
HGCCYVAGGCD
SELEX
Jolma et al.(2013)
TFAP2C_2
0.765
0.765
TFAP2C
M02758_2.00
Homo sapiens
WGCCCYNRGGGCD
HGCCCYNRGGGCW
SELEX
Jolma et al.(2013)
TFAP2C_3
0.765
0.765
TFAP2C
M02759_2.00
Homo sapiens
HSCCYBVRGGCD
HGCCYBVRGGSD
SELEX
Jolma et al.(2013)
TFAP2C_4
0.765
0.765
TFAP2C
M02760_2.00
Homo sapiens
NGCCCBNVRGGCN
NGCCYBNVGGGCN
SELEX
Jolma et al.(2013)
TFAP2C_5
0.765
0.765
TFAP2C
M02761_2.00
Homo sapiens
HGCCTBRGGCD
HGCCYVAGGCD
SELEX
Jolma et al.(2013)
TFAP2C_6
0.765
0.765
TFAP2C
M04048_2.00
Homo sapiens
NSCYHNHRGBN
NVCYDNDRGSN
SELEX
Yin et al.(2017)
TFAP2C_eDBD_HT-SELEX
0.765
0.765
TFAP2C
M07783_2.00
Homo sapiens
NSCCYSRGGSCANDN
NHNTGSCCYSRGGSN
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_AP2GAMMA_UCD
0.765
0.765
TFAP2C
M08702_2.00
Homo sapiens
NDSCCYCAGGSHHN
NDDSCCTGRGGSHN
Misc
Kulakovskiy et al.(2013)
AP2C_HUMAN.H11MO.0.A
0.765
0.765
TFAP2C
M09451_2.00
Homo sapiens
SCCYSRGGSHNN
NNDSCCYSRGGS
Misc
Heinz et al.(2010)
MCF7-TFAP2C_GSE21234
0.765
0.765
TFAP2C
M09751_2.00
Homo sapiens
GCCBBVRGS
SCYBVVGGC
Transfac
Matys et al.(2006)
V$AP2GAMMA_01
0.765
0.765
TFAP2C
M09752_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AP2GAMMA_Q4
0.765
0.765
TFAP2C
M09753_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AP2GAMMA_Q5_01
0.765
0.765
TFAP2C
M09754_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AP2GAMMA_Q5
0.765
0.765
TFAP2C
M04049_2.00
Homo sapiens
NSCCYNRGGSN
NSCCYNRGGSN
SELEX
Yin et al.(2017)
TFAP2C_eDBD_Methyl-HT-SELEX
0.765
0.765
Tfap2c
M00113_2.00
Mus musculus
NSCCBBVGGS
SCCBVVGGSN
PBM
Badis et al.(2009)
Tcfap2c_2912
0.757
0.757
Tfap2c
M08706_2.00
Mus musculus
NNSCCYGRGGSNN
NNSCCYCRGGSNN
Misc
Kulakovskiy et al.(2013)
AP2C_MOUSE.H11MO.0.A
0.757
0.757
AP-2
M03584_2.00
Drosophila melanogaster
HGCCYSRGGCD
HGCCYSRGGCD
SELEX
Nitta et al.(2015)
AP-2_1
0.743
0.743
AP-2
M03585_2.00
Drosophila melanogaster
HGCCYBVRGGCD
HGCCYBVRGGCD
SELEX
Nitta et al.(2015)
AP-2_2
0.743
0.743
AP-2
M03586_2.00
Drosophila melanogaster
NSCCYBNVRGGCN
NGCCYBNVRGGSN
SELEX
Nitta et al.(2015)
AP-2_3
0.743
0.743
AP-2
M03587_2.00
Drosophila melanogaster
HGCCYNRGGCD
HGCCYNRGGCD
SELEX
Nitta et al.(2015)
AP-2_4
0.743
0.743
AP-2
M03588_2.00
Drosophila melanogaster
HSCCYBVRGGSD
HSCCYBVRGGSD
SELEX
Nitta et al.(2015)
AP-2_5
0.743
0.743
AP-2
M03589_2.00
Drosophila melanogaster
HGCCYBNVRGGCD
HGCCYBNVRGGCD
SELEX
Nitta et al.(2015)
AP-2_6
0.743
0.743
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EFV52712
AP-2
198
336
DIFCSVPGRLSLLSSTSKYKVTVGEIQRRLSPPECLNASLLGGILRRAKSKNGGKSLRESLEKIGLNLPAGRRKAANVTLLTSLVEGEAIHLARDFGYACETEFPSRQVGEYLCRARCSGNFQLMQRRKEMLLSTKYFS
Links
Other
AP-2
family TFs
Other
Trichinella spiralis
TFs
98 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
TTRE_0000281201
Trichuris trichiura
TTRE_0000281201
I
1.000
D918_05204
Trichuris suis
D918_05204
I
1.000
D917_08051
Trichinella nativa
D917_08051
I
0.988
ENSGACG00000002672
Gasterosteus aculeatus
ENSGACG00000002672
I
0.955
ENSGMOG00000009513
Gadus morhua
ENSGMOG00000009513
I
0.955
tfap2b
Danio rerio
ENSDARG00000012667
I
0.955
ENSPCAG00000015999
Procavia capensis
ENSPCAG00000015999
I
0.952
ENSETEG00000009017
Echinops telfairi
ENSETEG00000009017
I
0.952
tfap2c
Danio rerio
ENSDARG00000040606
I
0.944
ENSXMAG00000003446
Xiphophorus maculatus
ENSXMAG00000003446
I
0.940
ENSFCAG00000013878
Felis catus
ENSFCAG00000013878
I
0.935
ENSSARG00000001996
Sorex araneus
ENSSARG00000001996
I
0.932
scaffold16-EXSNAP2012.142
Pristionchus exspectatus
scaffold16-EXSNAP2012.142
I
0.920
PEQ_0000626601
Parascaris equorum
PEQ_0000626601
I
0.920
ENSMEUG00000007703
Macropus eugenii
ENSMEUG00000007703
I
0.917
TFAP2A
Homo sapiens
ENSG00000137203
D
0.913
SSLN_0000471801
Schistocephalus solidus
SSLN_0000471801
I
0.891
PPA19579
Pristionchus pacificus
PPA19579
I
0.885
D915_00208
Fasciola hepatica
D915_00208
I
0.884
ACEP15405
Atta cephalotes
ACEP15405
I
0.876
EmuJ_000457200
Echinococcus multilocularis
EmuJ_000457200
I
0.875
ECPE_0000534101
Echinostoma caproni
ECPE_0000534101
I
0.875
MCINX002204
Melitaea cinxia
MCINX002204
I
0.875
ANCCEY_07283
Ancylostoma ceylanicum
ANCCEY_07283
I
0.864
Hba_07416
Heterorhabditis bacteriophora
Hba_07416
I
0.857
SMTD_0001395301
Schistosoma mattheei
SMTD_0001395301
I
0.854
TsM_000500400
Taenia solium
TsM_000500400
I
0.848
Sakowv30010957m.g
Saccoglossus kowalevskii
Sakowv30010957m.g
I
0.843
TFAP2D
Microcebus murinus
ENSMICG00000005507
I
0.841
EVEC_0000221401
Enterobius vermicularis
EVEC_0000221401
I
0.840
Hsal_09862--XP_394369.3_APIME
Harpegnathos saltator
Hsal_09862--XP_394369.3_APIME
I
0.837
SMAR004261
Strigamia maritima
SMAR004261
I
0.832
tfap2b
Tetraodon nigroviridis
ENSTNIG00000014240
I
0.826
TFAP2B
Erinaceus europaeus
ENSEEUG00000014925
I
0.824
TFAP2B
Sorex araneus
ENSSARG00000005232
I
0.824
TELCIR_24906
Teladorsagia circumcincta
TELCIR_24906
I
0.821
nOo.2.0.1.g09186
Onchocerca ochengi
nOo.2.0.1.g09186
I
0.821
CLEC012897
Cimex lectularius
CLEC012897
I
0.820
nAv.1.0.1.g06665
Acanthocheilonema viteae
nAv.1.0.1.g06665
I
0.818
GB50795
Apis mellifera
GB50795
I
0.816
NV15391
Nasonia vitripennis
NV15391
I
0.816
Myotis_brandtii_TFAP2C_10018204
Myotis brandtii
Myotis_brandtii_TFAP2C_10018204
I
0.812
SPER_0000909201
Spirometra erinaceieuropaei
SPER_0000909201
I
0.809
GPLIN_001548200
Globodera pallida
GPLIN_001548200
I
0.807
TFAP2A
Tursiops truncatus
ENSTTRG00000012832
I
0.802
TFAP2B
Gallus gallus
ENSGALG00000016680
I
0.801
Gfo_R000728
Geospiza fortis
Gfo_R000728
I
0.801
TFAP2B
Anolis carolinensis
ENSACAG00000005251
I
0.801
Pvit_00888
Pogona vitticeps
Pvit_00888
I
0.801
tfap2c.S
Xenopus laevis
XB-GENE-865803
I
0.801
tfap2b
Xenopus tropicalis
XB-GENE-485026
I
0.801
tfap2b.L
Xenopus laevis
XB-GENE-1188127
I
0.801
Alligator_sinensis_CCG010010.1
Alligator sinensis
Alligator_sinensis_CCG010010.1
I
0.801
ENSAPLG00000013905
Anas platyrhynchos
ENSAPLG00000013905
I
0.801
Brh_R009982
Buceros rhinoceros
Brh_R009982
I
0.801
ENSXMAG00000006217
Xiphophorus maculatus
ENSXMAG00000006217
I
0.801
ENSMGAG00000014245
Meleagris gallopavo
ENSMGAG00000014245
I
0.801
ENSPFOG00000015812
Poecilia formosa
ENSPFOG00000015812
I
0.801
TFAP2B
Taeniopygia guttata
ENSTGUG00000013267
I
0.801
ENSFALG00000012772
Ficedula albicollis
ENSFALG00000012772
I
0.801
Aan_R002198
Calypte anna
Aan_R002198
I
0.801
ENSGMOG00000017800
Gadus morhua
ENSGMOG00000017800
I
0.801
TFAP2A
Erinaceus europaeus
ENSEEUG00000002713
I
0.794
TFAP2B
Loxodonta africana
ENSLAFG00000027209
I
0.794
ENSLOCG00000016338
Lepisosteus oculatus
ENSLOCG00000016338
I
0.794
ALUE_0002350801
Ascaris lumbricoides
ALUE_0002350801
I
0.792
TFAP2E
Cavia porcellus
ENSCPOG00000024445
I
0.787
ENSNLEG00000000503
Nomascus leucogenys
ENSNLEG00000000503
I
0.779
ENSACAG00000008801
Anolis carolinensis
ENSACAG00000008801
I
0.779
ENSDORG00000004800
Dipodomys ordii
ENSDORG00000004800
I
0.779
Pvit_11230
Pogona vitticeps
Pvit_11230
I
0.779
ENSLACG00000016799
Latimeria chalumnae
ENSLACG00000016799
I
0.772
genemark-nMf.1.1.scaf12791-processed-gene-0.1
Meloidogyne floridensis
genemark-nMf.1.1.scaf12791-processed-gene-0.1
I
0.765
MhA1_Contig1235.frz3.gene9
Meloidogyne hapla
MhA1_Contig1235.frz3.gene9
I
0.765
TFAP2C
Felis catus
ENSFCAG00000005551
I
0.765
TFAP2C
Sus scrofa
ENSSSCG00000007499
I
0.765
SNAPOd2T00019365001
Oikopleura dioica
SNAPOd2T00019365001
I
0.757
ENSGMOG00000013321
Gadus morhua
ENSGMOG00000013321
I
0.757
ENSLOCG00000016336
Lepisosteus oculatus
ENSLOCG00000016336
I
0.750
Sjc_0121700
Schistosoma japonicum
Sjc_0121700
I
0.745
SINV20015
Solenopsis invicta
SINV20015
I
0.745
ENSVPAG00000012139
Vicugna pacos
ENSVPAG00000012139
I
0.744
Gfo_R000727
Geospiza fortis
Gfo_R000727
I
0.743
ENSAPLG00000014639
Anas platyrhynchos
ENSAPLG00000014639
I
0.743
Brh_R009368
Buceros rhinoceros
Brh_R009368
I
0.743
ENSMGAG00000014248
Meleagris gallopavo
ENSMGAG00000014248
I
0.743
Afo_R012706
Aptenodytes forsteri
Afo_R012706
I
0.743
TFAP2D
Gallus gallus
ENSGALG00000019842
I
0.743
ENSFALG00000012770
Ficedula albicollis
ENSFALG00000012770
I
0.743
Tal_R008010
Tyto alba
Tal_R008010
I
0.743
Aan_R002199
Calypte anna
Aan_R002199
I
0.743
TFAP2D
Taeniopygia guttata
ENSTGUG00000013264
I
0.743
GPUH_0002219901
Gongylonema pulchrum
GPUH_0002219901
I
0.742
OFLC_0000811001
Onchocerca flexuosa
OFLC_0000811001
I
0.741
snap_masked-nMf.1.1.scaf31395-processed-gene-0.2
Meloidogyne floridensis
snap_masked-nMf.1.1.scaf31395-processed-gene-0.2
I
0.738
Smp_157840
Schistosoma mansoni
Smp_157840
I
0.737
ASIM_0000382801
Anisakis simplex
ASIM_0000382801
N
0.726
ENSSTOG00000014299
Ictidomys tridecemlineatus
ENSSTOG00000014299
I
0.705