CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Alligator_sinensis_CCG004972.1
(
Alligator sinensis
)
ARID/BRIGHT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF01388 (ARID)
IPR001606
Alligator_sinensis_CCG004972.1
T015853_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TTHERM_00243900
M01666_2.00
Tetrahymena thermophila
NDDATYANN
NNTRATHHN
PBM
Weirauch et al.(2014)
pTH5128
0.427
0.400
GSPATT00004674001
M01665_2.00
Paramecium tetraurelia
NNATYHNN
NNDRATNN
PBM
Weirauch et al.(2014)
pTH5124
0.427
0.388
For this family, TFs with SR scores >
0.422
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Alligator_sinensis_CCG004972.1
ARID/BRIGHT
15
95
KGLAFLDELRQFHHSRGSPLKKIPVVGGKELDLHALYTRVTTLGGFGKVSEKNQWGEIAEEFNFPRSCSNAAFALKQYYLR
Links
Other
ARID/BRIGHT
family TFs
Other
Alligator sinensis
TFs
10 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cmyd_10012612
Chelonia mydas
Cmyd_10012612
I
0.737
Arid2
Mus musculus
ENSMUSG00000033237
I
0.691
ENSXMAG00000008966
Xiphophorus maculatus
ENSXMAG00000008966
I
0.587
Sakowv30024151m.g
Saccoglossus kowalevskii
Sakowv30024151m.g
N
0.471
SPU_023530
Strongylocentrotus purpuratus
SPU_023530
I
0.467
Cla007529
Citrullus lanatus
Cla007529
I
0.439
Cla016376
Citrullus lanatus
Cla016376
I
0.437
orange1.1g020305m.g
Citrus sinensis
orange1.1g020305m.g
I
0.428
TTHERM_00243900
Tetrahymena thermophila
TTHERM_00243900
D
0.427
GSPATT00004674001
Paramecium tetraurelia
GSPATT00004674001
D
0.427