CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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mgf009259m
(
Mimulus guttatus
)
ARID/BRIGHT,Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
mgf009259m
T017114_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mgf009259m
ARID/BRIGHT
30
115
EPDTFRQKLHSFHVFYGTKFRVPTLGRNPLDLHRLFLEVTSRGGIEKVIKDRRWKEVTGAFNFPSTITSASFVLRRYYLSLLYHFE
mgf009259m
Sox
234
301
PKRNRSGYTFFFAEQYHRLRPLYHGQERTISKKIGQLWSRLTEAEKQVYQEKGLRDKERYKAEMLEYK
Links
Other
ARID/BRIGHT,Sox
family TFs
Other
Mimulus guttatus
TFs
6 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
evm.TU.supercontig_12.68
Carica papaya
evm.TU.supercontig_12.68
I
0.762
orange1.1g020460m.g
Citrus sinensis
orange1.1g020460m.g
N
0.706
Ciclev10008919m.g
Citrus clementina
Ciclev10008919m.g
N
0.706
28657.m000391
Ricinus communis
28657.m000391
N
0.702
Ca_20521
Cicer arietinum
Ca_20521
N
0.702
POPTR_0011s17180
Populus trichocarpa
POPTR_0011s17180
N
0.702