Pavir.Ab01767 (Panicum virgatum)
ARID/BRIGHT,Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID)
PF00505 (HMG_box) 		IPR001606
IPR000910 		Pavir.Ab01767 T017166_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ab01767.1.p ARID/BRIGHT 78 163
Pavir.Ab01767.1.p Sox 290 357
Pavir.Ab01767.2.p ARID/BRIGHT 78 163
Pavir.Ab01767.2.p Sox 290 357
Pavir.Ab01767.3.p ARID/BRIGHT 78 163
Pavir.Ab01767.3.p Sox 290 357

Links

Other ARID/BRIGHT,Sox family TFs
Other Panicum virgatum TFs

20 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Aa02269 Panicum virgatum Pavir.Aa02269 N 0.987
Si017168m.g Setaria italica Si017168m.g N 0.967
Sb04g017850 Sorghum bicolor Sb04g017850 N 0.954
GRMZM2G024976 Zea mays GRMZM2G024976 N 0.954
BRADI3G43310 Brachypodium distachyon BRADI3G43310 N 0.928
Traes_6AS_A465E600A Triticum aestivum Traes_6AS_A465E600A N 0.922
MLOC_42821 Hordeum vulgare MLOC_42821 I 0.908
ORUFI02G16870 Oryza rufipogon ORUFI02G16870 N 0.889
OS02G0469900 Oryza sativa OS02G0469900 N 0.889
OPUNC02G14620 Oryza punctata OPUNC02G14620 N 0.889
OMERI02G15910 Oryza meridionalis OMERI02G15910 N 0.889
OBART02G16380 Oryza barthii OBART02G16380 N 0.889
OLONG_013998 Oryza longistaminata OLONG_013998 N 0.889
OGLUM02G16420 Oryza glumaepatula OGLUM02G16420 N 0.889
BGIOSGA008185 Oryza indica BGIOSGA008185 N 0.889
ONIVA02G17640 Oryza nivara ONIVA02G17640 N 0.824
LPERR02G13140 Leersia perrieri LPERR02G13140 I 0.817
OB0121G10030 Oryza brachyantha OB0121G10030 N 0.810
TRIUR3_18598 Triticum urartu TRIUR3_18598 N 0.752