CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo7g116090
(
Brassica oleracea
)
B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02362 (B3)
IPR003340
Bo7g116090
T018726_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT4G33280
M06709_2.00
Arabidopsis thaliana
WWTWYKKTTTTGGCGGGAAAA
TTTTCCCGCCAAAAMMRWAWW
Dap-seq
OMalley et al.(2016)
REM16_col_a
0.703
0.703
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo7g116090.1
B3
384
469
PLSFFLVAIPKKFSTYCKRKLPKIVTLKSPSGAKYNVGLEEDDEKTLAFRCGWDKFVKDHSLHESDLLVFKFNGSSEFEVLIFDGD
Bo7g116090.1
B3
629
727
FLVVMKRSHVVSKCFLYVPVQWSARNMSREPQDVVMQVGETKWQLKFKHYGSKGRGGVSVGWKKFVRDNNLCEGDVCVFEPTKPEAKPFHLDVYIFRAA
Links
Other
B3
family TFs
Other
Brassica oleracea
TFs
2 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bra037010
Brassica rapa
Bra037010
I
0.929
AT4G33280
Arabidopsis thaliana
AT4G33280
D
0.703