CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh1_pm.C_scaffold_3001481
(
Arabidopsis lyrata
)
B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02362 (B3)
IPR003340
fgenesh1_pm.C_scaffold_3001481
T019185_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh1_pm.C_scaffold_3001481
B3
21
116
FFKIFQSSDLSSECMRAFSYSFISRLSRKDFSYKMVIRAQWGKTWHLEISKNPRYYYIERRGWDQFVSDNALGENEFITFTHRGNMVFHVNIYEQN
fgenesh1_pm.C_scaffold_3001481
B3
201
292
FKITIRKSYLKFLAIPKHFVDDHIPNKSKFFTVRHPNGIGSWKVLCLVREIRTIFSGGYSKLAREYPLMVGDKCTFKLIKPFEFVLLTSKKT
Links
Other
B3
family TFs
Other
Arabidopsis lyrata
TFs
4 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AT3G17010
Arabidopsis thaliana
AT3G17010
N
0.824
Bostr.19424s0967
Boechera stricta
Bostr.19424s0967
N
0.785
Cagra.4396s0008
Capsella grandiflora
Cagra.4396s0008
N
0.742
Carubv10015789m.g
Capsella rubella
Carubv10015789m.g
N
0.742