CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
fgenesh1_pm.C_scaffold_4000331
(
Arabidopsis lyrata
)
B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02362 (B3)
IPR003340
fgenesh1_pm.C_scaffold_4000331
T019187_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh1_pm.C_scaffold_4000331
B3
28
123
YSCFVTASSQQTDALRLPMQFTRENGINKPGKIYLLGKDGSKWLANLLSENNRGRMTLGDGWKSFVKANGLKTGDTYTFKLFWDDTIPVLSLCSEE
fgenesh1_pm.C_scaffold_4000331
B3
188
282
LTLTITPDSLEHGRLRLPLQFMTENNMNKPGEITLLGKDGAKWMASLLLERRGRMSLGKGWKDFAKANGVKTGDSITLESIWEDTTPVLKLISIE
fgenesh1_pm.C_scaffold_4000331
B3
496
566
FLTLTITPDSLKHGRLRLPLQFMTENSMNKPGEITVLGKDGAKWLVSLLLERRGRMSLDASSGHKTREAEK
fgenesh1_pm.C_scaffold_4000331
B3
578
673
FLTLTLAPEDVKDGNLHLPIQFMRINGINKPGKITLLGRGGLKWFAYLLSRDGTVVLGNGWKGFCEANGVMLGESFILEFISIEDTNHVFKFYSSY
Links
Other
B3
family TFs
Other
Arabidopsis lyrata
TFs
2 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AT2G24690
Arabidopsis thaliana
AT2G24690
N
0.854
Cagra.15158s0010
Capsella grandiflora
Cagra.15158s0010
N
0.776