CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0001s23180
(
Populus trichocarpa
)
BED ZF,C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02892 (zf-BED)
PF00096 (zf-C2H2)
IPR003656
IPR007087
POPTR_0001s23180
T025098_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0001s23180.1
BED ZF
67
95
YRVCEYCGKEFSSGKAWGGHKRHHLKNDK
POPTR_0001s23180.1
C2H2 ZF
145
166
TCCLCAKVFPSMNSLFGHMRFH
POPTR_0001s23180.1
C2H2 ZF
436
458
FQCDICHKTFPTGQALGGHKRCH
Links
Other
BED ZF,C2H2 ZF
family TFs
Other
Populus trichocarpa
TFs
1 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SapurV1A.0008s0060
Salix purpurea
SapurV1A.0008s0060
N
0.914