CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh_scip_prom.46568.9467
(
Phytophthora kernoviae
)
BED ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02892 (zf-BED)
IPR003656
fgenesh_scip_prom.46568.9467
T026512_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh_scip_prom.46568.9467
BED ZF
262
320
DEWAHFQKLPEEGRVPNSSYWYVMCRHCMLAYEQKQLQNAPAKITGRRSAMHAHLKACP
fgenesh_scip_prom.46568.9467
BED ZF
379
440
EEWEHFNRLQEDGYIGKSNFFHAICRYCQQAYDEASEDQKPLLVPEKLVGRREKLRKHLVHC
fgenesh_scip_prom.46568.9467
BED ZF
511
571
DEWQYFTRMERKKDSAYYHARCNFCQQAYENAPESLKASMEPPYVTGRKSNMQTHLAKCPH
Links
Other
BED ZF
family TFs
Other
Phytophthora kernoviae
TFs
4 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ALNC14_099980
Albugo laibachii
ALNC14_099980
N
0.784
ALNC14_101820
Albugo laibachii
ALNC14_101820
N
0.784
maker-pir_contig_873-snap-gene-0.9
Pythium irregulare
maker-pir_contig_873-snap-gene-0.9
N
0.712
maker-par_contig_1330-snap-gene-0.4
Pythium arrhenomanes
maker-par_contig_1330-snap-gene-0.4
N
0.707