CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J10360
(
Panicum virgatum
)
BED ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02892 (zf-BED)
IPR003656
Pavir.J10360
T028563_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J10360.1.p
BED ZF
80
135
SPVWDDFEKLFKTTADGKTVRYGARCLHCSKIYSGFSSGGTGHLSRHIASCVKRRE
Pavir.J10360.2.p
BED ZF
80
135
SPVWDDFEKLFKTTADGKTVRYGARCLHCSKIYSGFSSGGTGHLSRHIASCVKRRE
Links
Other
BED ZF
family TFs
Other
Panicum virgatum
TFs
4 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.J30766
Panicum virgatum
Pavir.J30766
N
0.786
Pavir.J10640
Panicum virgatum
Pavir.J10640
N
0.762
Pavir.J19980
Panicum virgatum
Pavir.J19980
N
0.714