CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
augustus_masked-nMf.1.1.scaf00396-processed-gene-0.0
(
Meloidogyne floridensis
)
BED ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02892 (zf-BED)
IPR003656
augustus_masked-nMf.1.1.scaf00396-processed-gene-0.0
T029262_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
augustus_masked-nMf.1.1.scaf00396-processed-gene-0.0-mRNA-1
BED ZF
9
46
FYIVNLGEVTEQQYKKCRFCNKNFEKTELGLHLLLAHK
augustus_masked-nMf.1.1.scaf00396-processed-gene-0.0-mRNA-1
BED ZF
81
107
SKKCLPCDTTITTKNFKRHIRSPKHKK
Links
Other
BED ZF
family TFs
Other
Meloidogyne floridensis
TFs
1 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Minc15282
Meloidogyne incognita
Minc15282
N
0.966