CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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HPBE_0002067501
(
Heligmosomoides bakeri
)
BED ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02892 (zf-BED)
IPR003656
HPBE_0002067501
T029388_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
HPBE_0002067501-mRNA-1
BED ZF
218
257
VTEYIEHLKEKLQRNECIYCEKTFGDRNILMDHMRKRNHR
HPBE_0002067501-mRNA-1
BED ZF
307
347
SWCEWHEDNVDADETRVVCLLCHESDDTAEGLLDHMKDKHE
HPBE_0002067501-mRNA-1
BED ZF
362
402
YQRMKLINYIRKQNFNAVCFLCQRSDIGNTQELAKHLQEHE
Links
Other
BED ZF
family TFs
Other
Heligmosomoides bakeri
TFs
10 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
NBR_0001751501
Nippostrongylus brasiliensis
NBR_0001751501
N
0.928
OESDEN_15339
Oesophagostomum dentatum
OESDEN_15339
N
0.869
ANCCAN_25995
Ancylostoma caninum
ANCCAN_25995
N
0.856
NECAME_13887
Necator americanus
NECAME_13887
N
0.849
HCOI00479300
Haemonchus contortus
HCOI00479300
N
0.848
HPLM_0000898801
Haemonchus placei
HPLM_0000898801
N
0.848
OESDEN_04759
Oesophagostomum dentatum
OESDEN_04759
N
0.804
ANCDUO_06205
Ancylostoma duodenale
ANCDUO_06205
N
0.786
HCOI01827300
Haemonchus contortus
HCOI01827300
N
0.741
ANCCEY_12439
Ancylostoma ceylanicum
ANCCEY_12439
N
0.705