CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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maker-nMf.1.1.scaf03419-snap-gene-0.5
(
Meloidogyne floridensis
)
BED ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02892 (zf-BED)
IPR003656
maker-nMf.1.1.scaf03419-snap-gene-0.5
T029466_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
maker-nMf.1.1.scaf03419-snap-gene-0.5-mRNA-1
BED ZF
3
50
AKIWKFFEVKIVNGEKMRKCLKCGDMLPTPQDHSTGNMINHLKKKGHE
Links
Other
BED ZF
family TFs
Other
Meloidogyne floridensis
TFs
3 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Minc06865
Meloidogyne incognita
Minc06865
N
0.705
Minc10370
Meloidogyne incognita
Minc10370
N
0.705
maker-nMf.1.1.scaf08229-augustus-gene-0.3
Meloidogyne floridensis
maker-nMf.1.1.scaf08229-augustus-gene-0.3
N
0.705