Cagra.6952s0001 (Capsella grandiflora)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Cagra.6952s0001 T049315_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH10
M06731_2.00 		Arabidopsis thaliana
YCACCGACANHDNH
DNHDNTGTCGGTGR		 Dap-seq
OMalley et al.(2016)
bHLH10_col_a 		0.914 0.920
BHLH10
M06732_2.00 		Arabidopsis thaliana
NDBCACCGACANH
DNTGTCGGTGVHN		 Dap-seq
OMalley et al.(2016)
bHLH10_colamp_a 		0.914 0.920
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.6952s0001.1.p bHLH 150 199

Links

Other bHLH family TFs
Other Capsella grandiflora TFs

4 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BHLH10 Arabidopsis thaliana AT2G31220 D 0.914
Bostr.24513s0102 Boechera stricta Bostr.24513s0102 I 0.914
Carubv10023056m.g Capsella rubella Carubv10023056m.g I 0.914
fgenesh2_kg.4__1109__AT2G31220.1 Arabidopsis lyrata fgenesh2_kg.4__1109__AT2G31220.1 I 0.902