Pavir.Fb01689 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.Fb01689 T050779_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Fb01689.1.p bHLH 173 210

Links

Other bHLH family TFs
Other Panicum virgatum TFs

229 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.contig_46440 Carica papaya evm.TU.contig_46440 N 0.898
Ciclev10026976m.g Citrus clementina Ciclev10026976m.g N 0.871
30115.m001220 Ricinus communis 30115.m001220 N 0.847
30146.m003443 Ricinus communis 30146.m003443 N 0.847
cassava34914.m1 Manihot esculenta cassava34914.m1 N 0.847
cassava41909.m1 Manihot esculenta cassava41909.m1 N 0.847
30170.m013861 Ricinus communis 30170.m013861 N 0.847
Pm030884 Prunus mume Pm030884 N 0.847
Cla015855 Citrullus lanatus Cla015855 N 0.847
Cla020973 Citrullus lanatus Cla020973 N 0.847
Cla022928 Citrullus lanatus Cla022928 N 0.847
Pm005293 Prunus mume Pm005293 N 0.847
cassava45275.m1 Manihot esculenta cassava45275.m1 N 0.847
cassava8495.m1 Manihot esculenta cassava8495.m1 N 0.847
mgf023933m Mimulus guttatus mgf023933m N 0.847
Aquca_001_00189 Aquilegia coerulea Aquca_001_00189 N 0.847
Aquca_007_00665 Aquilegia coerulea Aquca_007_00665 N 0.847
Bostr.0568s0128 Boechera stricta Bostr.0568s0128 N 0.847
mg018414m Mimulus guttatus mg018414m N 0.847
Cucsa.396050 Cucumis sativus Cucsa.396050 N 0.847
Ca_09282 Cicer arietinum Ca_09282 N 0.847
Cucsa.352300 Cucumis sativus Cucsa.352300 N 0.847
Cucsa.360770 Cucumis sativus Cucsa.360770 N 0.847
Bostr.13129s0018 Boechera stricta Bostr.13129s0018 N 0.847
Ca_02767 Cicer arietinum Ca_02767 N 0.847
Si015197m.g Setaria italica Si015197m.g N 0.847
Si015349m.g Setaria italica Si015349m.g N 0.847
Si030966m.g Setaria italica Si030966m.g N 0.847
Solyc02g090950.1 Solanum lycopersicum Solyc02g090950.1 N 0.847
Sb07g022920 Sorghum bicolor Sb07g022920 N 0.847
Sb07g000910 Sorghum bicolor Sb07g000910 N 0.847
PRUPE_ppa015446mg Prunus persica PRUPE_ppa015446mg N 0.847
PRUPE_ppa021226mg Prunus persica PRUPE_ppa021226mg N 0.847
Sb02g026530 Sorghum bicolor Sb02g026530 N 0.847
Sb07g000900 Sorghum bicolor Sb07g000900 N 0.847
Solyc03g121240.1 Solanum lycopersicum Solyc03g121240.1 N 0.847
Solyc04g078790.2 Solanum lycopersicum Solyc04g078790.2 N 0.847
TRIUR3_19098 Triticum urartu TRIUR3_19098 N 0.847
VIT_07s0031g00550 Vitis vinifera VIT_07s0031g00550 N 0.847
VIT_09s0002g02700 Vitis vinifera VIT_09s0002g02700 N 0.847
Ca_01550 Cicer arietinum Ca_01550 N 0.847
Traes_7DL_F43F7A9A3 Triticum aestivum Traes_7DL_F43F7A9A3 N 0.847
Traes_6AS_C1A37E015 Triticum aestivum Traes_6AS_C1A37E015 N 0.847
TCM_000632 Theobroma cacao TCM_000632 N 0.847
AMTR_s00008p00265010 Amborella trichopoda AMTR_s00008p00265010 N 0.847
TCM_033818 Theobroma cacao TCM_033818 N 0.847
Traes_5BL_DDC2491F7 Triticum aestivum Traes_5BL_DDC2491F7 N 0.847
Bostr.6864s0212 Boechera stricta Bostr.6864s0212 N 0.847
Cagra.1085s0086 Capsella grandiflora Cagra.1085s0086 N 0.847
orange1.1g020172m.g Citrus sinensis orange1.1g020172m.g N 0.847
orange1.1g024139m.g Citrus sinensis orange1.1g024139m.g N 0.847
Pavir.Ba02034 Panicum virgatum Pavir.Ba02034 N 0.847
Pavir.Fa00680 Panicum virgatum Pavir.Fa00680 N 0.847
MDP0000249405 Malus domestica MDP0000249405 N 0.847
MDP0000166245 Malus domestica MDP0000166245 N 0.847
Lus10012670.g Linum usitatissimum Lus10012670.g N 0.847
MDP0000123893 Malus domestica MDP0000123893 N 0.847
MDP0000123894 Malus domestica MDP0000123894 N 0.847
MDP0000145937 Malus domestica MDP0000145937 N 0.847
Pavir.Fa02152 Panicum virgatum Pavir.Fa02152 N 0.847
Pavir.J20328 Panicum virgatum Pavir.J20328 N 0.847
Thhalv10011068m.g Eutrema salsugineum Thhalv10011068m.g N 0.847
Thhalv10015330m.g Eutrema salsugineum Thhalv10015330m.g N 0.847
PK01043.1 Cannabis sativa PK01043.1 N 0.847
PK21140.1 Cannabis sativa PK21140.1 N 0.847
Thhalv10004846m.g Eutrema salsugineum Thhalv10004846m.g N 0.847
SapurV1A.2123s0040 Salix purpurea SapurV1A.2123s0040 N 0.847
Pavir.J21912 Panicum virgatum Pavir.J21912 N 0.847
Pavir.J39499 Panicum virgatum Pavir.J39499 N 0.847
SapurV1A.0167s0080 Salix purpurea SapurV1A.0167s0080 N 0.847
SapurV1A.0423s0010 Salix purpurea SapurV1A.0423s0010 N 0.847
Lus10009745.g Linum usitatissimum Lus10009745.g N 0.847
Lus10003500.g Linum usitatissimum Lus10003500.g N 0.847
Eucgr.F00216 Eucalyptus grandis Eucgr.F00216 N 0.847
Eucgr.H01682 Eucalyptus grandis Eucgr.H01682 N 0.847
Eucgr.H02048 Eucalyptus grandis Eucgr.H02048 N 0.847
evm.TU.supercontig_131.7 Carica papaya evm.TU.supercontig_131.7 N 0.847
Ciclev10003815m.g Citrus clementina Ciclev10003815m.g N 0.847
Carubv10027898m.g Capsella rubella Carubv10027898m.g N 0.847
POPTR_0014s02720 Populus trichocarpa POPTR_0014s02720 N 0.847
Cagra.2428s0003 Capsella grandiflora Cagra.2428s0003 N 0.847
Carubv10003900m.g Capsella rubella Carubv10003900m.g N 0.847
Carubv10019056m.g Capsella rubella Carubv10019056m.g N 0.847
evm.TU.supercontig_49.31 Carica papaya evm.TU.supercontig_49.31 N 0.847
evm.TU.supercontig_55.142 Carica papaya evm.TU.supercontig_55.142 N 0.847
Gorai.007G213700 Gossypium raimondii Gorai.007G213700 N 0.847
Gorai.009G212900 Gossypium raimondii Gorai.009G212900 N 0.847
Gorai.010G020500 Gossypium raimondii Gorai.010G020500 N 0.847
Gorai.011G069200 Gossypium raimondii Gorai.011G069200 N 0.847
Gorai.003G060900 Gossypium raimondii Gorai.003G060900 N 0.847
Gorai.003G025300 Gossypium raimondii Gorai.003G025300 N 0.847
gene09115-v1.0-hybrid Fragaria vesca gene09115-v1.0-hybrid N 0.847
gene22897-v1.0-hybrid Fragaria vesca gene22897-v1.0-hybrid N 0.847
gene23830-v1.0-hybrid Fragaria vesca gene23830-v1.0-hybrid N 0.847
Cagra.0706s0009 Capsella grandiflora Cagra.0706s0009 N 0.847
TCM_028961 Theobroma cacao TCM_028961 N 0.847
LPERR08G14680 Leersia perrieri LPERR08G14680 N 0.847
LPERR09G09120 Leersia perrieri LPERR09G09120 N 0.847
MLOC_16429 Hordeum vulgare MLOC_16429 N 0.847
Bo7g064100 Brassica oleracea Bo7g064100 N 0.847
LPERR08G01030 Leersia perrieri LPERR08G01030 N 0.847
GSMUA_Achr6G18580_001 Musa acuminata GSMUA_Achr6G18580_001 N 0.847
GSMUA_Achr8G23350_001 Musa acuminata GSMUA_Achr8G23350_001 N 0.847
Bo8g079710 Brassica oleracea Bo8g079710 N 0.847
GLYMA04G04190 Glycine max GLYMA04G04190 N 0.847
MTR_2g100490 Medicago truncatula MTR_2g100490 N 0.847
Bo2g009510 Brassica oleracea Bo2g009510 N 0.847
Bo1g084640 Brassica oleracea Bo1g084640 N 0.847
BGIOSGA030896 Oryza indica BGIOSGA030896 N 0.847
MTR_8g015450 Medicago truncatula MTR_8g015450 N 0.847
MTR_5g017210 Medicago truncatula MTR_5g017210 N 0.847
F775_52433 Aegilops tauschii F775_52433 N 0.847
Bo2g167880 Brassica oleracea Bo2g167880 N 0.847
GSMUA_Achr5G01290_001 Musa acuminata GSMUA_Achr5G01290_001 N 0.847
GSMUA_Achr10G25590_001 Musa acuminata GSMUA_Achr10G25590_001 N 0.847
GLYMA11G05920 Glycine max GLYMA11G05920 N 0.847
GLYMA13G42900 Glycine max GLYMA13G42900 N 0.847
Bra036801 Brassica rapa Bra036801 N 0.847
Bra012128 Brassica rapa Bra012128 N 0.847
GLYMA06G04380 Glycine max GLYMA06G04380 N 0.847
Bra036071 Brassica rapa Bra036071 N 0.847
Bra030002 Brassica rapa Bra030002 N 0.847
Bra028620 Brassica rapa Bra028620 N 0.847
Bo9g173860 Brassica oleracea Bo9g173860 N 0.847
GLYMA15G02531 Glycine max GLYMA15G02531 N 0.847
GRMZM2G414252 Zea mays GRMZM2G414252 N 0.847
GRMZM2G471635 Zea mays GRMZM2G471635 N 0.847
Bra037128 Brassica rapa Bra037128 N 0.847
GRMZM2G134735 Zea mays GRMZM2G134735 N 0.847
GLYMA05G19920 Glycine max GLYMA05G19920 N 0.847
GLYMA17G19830 Glycine max GLYMA17G19830 N 0.847
Bo9g020420 Brassica oleracea Bo9g020420 N 0.847
OB08G10720 Oryza brachyantha OB08G10720 N 0.847
OGLUM08G00660 Oryza glumaepatula OGLUM08G00660 N 0.847
ORUFI08G19930 Oryza rufipogon ORUFI08G19930 N 0.847
ORUFI09G13650 Oryza rufipogon ORUFI09G13650 N 0.847
OS08G0108500 Oryza sativa OS08G0108500 N 0.847
ORUFI08G00650 Oryza rufipogon ORUFI08G00650 N 0.847
BRADI3G38250 Brachypodium distachyon BRADI3G38250 N 0.847
HEC1 Arabidopsis lyrata fgenesh2_kg.8__2711__AT5G67060.1 N 0.847
ORGLA09G0096500 Oryza glaberrima ORGLA09G0096500 N 0.847
HEC3 Arabidopsis lyrata fgenesh2_kg.6__929__AT5G09750.1 N 0.847
OS09G0455300 Oryza sativa OS09G0455300 N 0.847
PGSC0003DMG400004039 Solanum tuberosum PGSC0003DMG400004039 N 0.847
BRADI4G32060 Brachypodium distachyon BRADI4G32060 N 0.847
F775_04427 Aegilops tauschii F775_04427 N 0.847
POPTR_0005s18210 Populus trichocarpa POPTR_0005s18210 N 0.847
HEC2 Arabidopsis lyrata fgenesh2_kg.5__1376__AT3G50330.1 N 0.847
POPTR_0002s12660 Populus trichocarpa POPTR_0002s12660 N 0.847
PGSC0003DMG400007964 Solanum tuberosum PGSC0003DMG400007964 N 0.847
HEC2 Arabidopsis thaliana AT3G50330 N 0.847
ORGLA08G0237200 Oryza glaberrima ORGLA08G0237200 N 0.847
ORGLA08G0155700 Oryza glaberrima ORGLA08G0155700 N 0.847
OGLUM09G13100 Oryza glumaepatula OGLUM09G13100 N 0.847
OMERI08G00980 Oryza meridionalis OMERI08G00980 N 0.847
BGIOSGA026828 Oryza indica BGIOSGA026828 N 0.847
BRADI3G13300 Brachypodium distachyon BRADI3G13300 N 0.847
BGIOSGA027780 Oryza indica BGIOSGA027780 N 0.847
OGLUM08G18600 Oryza glumaepatula OGLUM08G18600 N 0.847
GLYMA01G39360 Glycine max GLYMA01G39360 N 0.847
OMERI09G10060 Oryza meridionalis OMERI09G10060 N 0.847
HEC1 Arabidopsis thaliana AT5G67060 N 0.847
OPUNC08G00600 Oryza punctata OPUNC08G00600 N 0.847
OPUNC08G15570 Oryza punctata OPUNC08G15570 N 0.847
OPUNC09G11020 Oryza punctata OPUNC09G11020 N 0.847
ONIVA08G19790 Oryza nivara ONIVA08G19790 N 0.847
HEC3 Arabidopsis thaliana AT5G09750 N 0.847
ONIVA03G20840 Oryza nivara ONIVA03G20840 N 0.847
ONIVA08G00590 Oryza nivara ONIVA08G00590 N 0.847
Gorai.011G116100 Gossypium raimondii Gorai.011G116100 N 0.844
Bo3g054830 Brassica oleracea Bo3g054830 N 0.844
Thhalv10022273m.g Eutrema salsugineum Thhalv10022273m.g N 0.844
IND Arabidopsis thaliana AT4G00120 N 0.844
Thhalv10029526m.g Eutrema salsugineum Thhalv10029526m.g N 0.844
BHLH87 Arabidopsis thaliana AT3G21330 N 0.844
LjT10C23.20.nc Lotus japonicus LjT10C23.20.nc N 0.844
LjSGA_011209.1 Lotus japonicus LjSGA_011209.1 N 0.844
SapurV1A.0550s0030 Salix purpurea SapurV1A.0550s0030 N 0.844
SapurV1A.0352s0020 Salix purpurea SapurV1A.0352s0020 N 0.844
Lus10042647.g Linum usitatissimum Lus10042647.g N 0.844
Lus10005710.g Linum usitatissimum Lus10005710.g N 0.844
Bra000979 Brassica rapa Bra000979 N 0.844
MDP0000420192 Malus domestica MDP0000420192 N 0.844
Bo5g101160 Brassica oleracea Bo5g101160 N 0.844
MDP0000711774 Malus domestica MDP0000711774 N 0.844
Bra031275 Brassica rapa Bra031275 N 0.844
Bostr.19424s0519 Boechera stricta Bostr.19424s0519 N 0.844
Pm001707 Prunus mume Pm001707 N 0.844
Cla008578 Citrullus lanatus Cla008578 N 0.844
Ca_10121 Cicer arietinum Ca_10121 N 0.844
Ca_09667 Cicer arietinum Ca_09667 N 0.844
MTR_8g093500 Medicago truncatula MTR_8g093500 N 0.844
Pm026380 Prunus mume Pm026380 N 0.844
cassava15224.m1 Manihot esculenta cassava15224.m1 N 0.844
MTR_3g101810 Medicago truncatula MTR_3g101810 N 0.844
30136.m001043 Ricinus communis 30136.m001043 N 0.844
Ca_02154 Cicer arietinum Ca_02154 N 0.844
VIT_18s0001g10400 Vitis vinifera VIT_18s0001g10400 N 0.844
POPTR_0005s06220 Populus trichocarpa POPTR_0005s06220 N 0.844
PRUPE_ppa022938mg Prunus persica PRUPE_ppa022938mg N 0.844
PRUPE_ppa021410mg Prunus persica PRUPE_ppa021410mg N 0.844
PGSC0003DMG400028657 Solanum tuberosum PGSC0003DMG400028657 N 0.844
Solyc11g005780.1 Solanum lycopersicum Solyc11g005780.1 N 0.844
HEC3 Vitis vinifera VIT_04s0044g01040 N 0.844
TCM_001435 Theobroma cacao TCM_001435 N 0.844
Solyc12g088790.1 Solanum lycopersicum Solyc12g088790.1 N 0.844
cassava5871.m1 Manihot esculenta cassava5871.m1 N 0.844
Cucsa.101020 Cucumis sativus Cucsa.101020 N 0.844
GLYMA06G15730 Glycine max GLYMA06G15730 N 0.844
Carubv10013989m.g Capsella rubella Carubv10013989m.g N 0.844
GLYMA07G01611 Glycine max GLYMA07G01611 N 0.844
Carubv10003163m.g Capsella rubella Carubv10003163m.g N 0.844
GLYMA05G32410 Glycine max GLYMA05G32410 N 0.844
GLYMA04G39210 Glycine max GLYMA04G39210 N 0.844
fgenesh2_kg.3__2354__AT3G21330.1 Arabidopsis lyrata fgenesh2_kg.3__2354__AT3G21330.1 N 0.844
IND1 Arabidopsis lyrata fgenesh2_kg.6__3690__AT4G00120.1 N 0.844
Eucgr.H04946 Eucalyptus grandis Eucgr.H04946 N 0.844
GLYMA08G16570 Glycine max GLYMA08G16570 N 0.844
Cagra.1757s0024 Capsella grandiflora Cagra.1757s0024 N 0.844
Aquca_022_00317 Aquilegia coerulea Aquca_022_00317 N 0.844
Aquca_010_00306 Aquilegia coerulea Aquca_010_00306 N 0.844
mgf019142m Mimulus guttatus mgf019142m N 0.844
Bostr.14547s0021 Boechera stricta Bostr.14547s0021 N 0.844
XM_002310473.1 Populus trichocarpa POPTR_0007s03950 N 0.844
Cagra.1261s0004 Capsella grandiflora Cagra.1261s0004 N 0.844
gene17881-v1.0-hybrid Fragaria vesca gene17881-v1.0-hybrid N 0.844
GLYMA08G21130 Glycine max GLYMA08G21130 N 0.844
Bra001826 Brassica rapa Bra001826 N 0.843
Bo3g078540 Brassica oleracea Bo3g078540 N 0.843