CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

brk *(Drosophila melanogaster)* Brinker
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF09607 (BrkDBD)	IPR018586	FBgn0024250	T055663_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
brk M03628_2.00	Drosophila melanogaster	WRGCGCCGGCGCYW	WRGCGCCGGCGCYW	SELEX Nitta et al.(2015) brk_1	(Direct)	(Direct)
brk M03629_2.00	Drosophila melanogaster	WRGCGCCAGGCGCYW	WRGCGCCTGGCGCYW	SELEX Nitta et al.(2015) brk_2	(Direct)	(Direct)
brk M03630_2.00	Drosophila melanogaster	WRGCGCCATGGCGCYW	WRGCGCCATGGCGCYW	SELEX Nitta et al.(2015) brk_3	(Direct)	(Direct)
brk M06013_2.00	Drosophila melanogaster	RGCGCCRS	SYGGCGCY	B1H Zhu et al.(2011) brk_FlyReg_FBgn0024250	(Direct)	(Direct)
brk M07539_2.00	Drosophila melanogaster	RGCGCCRS	SYGGCGCY	DNaseI footprinting Mathelier et al.(2014) MA0213.1	(Direct)	(Direct)
brk M09658_2.00	Drosophila melanogaster	BHRRCGCCABBHVV	BBDVVTGGCGYYDV	Misc Kulakovskiy et al.(2009) brk	(Direct)	(Direct)
brk M09903_2.00	Drosophila melanogaster	Transfac license required	Transfac license required	Transfac Matys et al.(2006) I$BRK_Q6	(Direct)	(Direct)
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
FBpp0071007	Brinker	43	100	GSRRIFTPHFKLQVLESYRNDNDCKGNQRATARKYNIHRRQIQKWLQCESNLRSSVAN

Links
Other Brinker family TFs
Other *Drosophila melanogaster* TFs