ELF6 (Arabidopsis thaliana)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 AT5G04240 T080873_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Relative of Early Flowering 6 (REF6) encodes a Jumonji N/C and zinc finger domain-containing protein that acts as a positive regulator of flowering in an FLC-dependent pathway. REF6 mutants have hyperacetylation of histone H4 at the FLC locus. REF6 interacts with BES1 in a Y2H assay and in vitro. REF6 may play a role in brassinoteroid signaling by affecting histone methylation in the promoters of BR-responsive genes. It is most closely related to the JHDM3 subfamily of JmjN/C proteins.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G04240.1 C2H2 ZF 1229 1251
AT5G04240.1 C2H2 ZF 1252 1275
AT5G04240.1 C2H2 ZF 1311 1337

Links

Other C2H2 ZF family TFs
Other Arabidopsis thaliana TFs

4 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.9217s0004 Capsella grandiflora Cagra.9217s0004 N 0.811
Carubv10000051m.g Capsella rubella Carubv10000051m.g N 0.795
Bostr.2128s0023 Boechera stricta Bostr.2128s0023 N 0.792
ELF6 Arabidopsis lyrata fgenesh2_kg.6__338__AT5G04240.1 N 0.765