snai3 (Danio rerio)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSDARG00000031243 T090879_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SNAI1
M04441_2.00 		Homo sapiens
NVCACCTGYN
NRCAGGTGBN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_HT-SELEX 		0.757 0.833
SNAI1
M04443_2.00 		Homo sapiens
TRCACCTGYN
NRCAGGTGYA		 SELEX
Yin et al.(2017)
SNAI1_FL_HT-SELEX 		0.757 0.833
SNAI1
M08303_2.00 		Homo sapiens
NNNNGCACCTGCYNB
VNRGCAGGTGCNNNN		 ChIP-seq
Schmitges et al.(2016)
O95863.MEME 		0.757 0.833
SNAI1
M08886_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 Misc
Kulakovskiy et al.(2013)
SNAI1_HUMAN.H11MO.0.C 		0.757 0.833
SNAI1
M10201_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q4 		0.757 0.833
SNAI1
M10202_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q6 		0.757 0.833
SNAI1
M04442_2.00 		Homo sapiens
NRCACCTGYN
NRCAGGTGYN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_Methyl-HT-SELEX 		0.757 0.833
SNAI1
M04444_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI1_FL_Methyl-HT-SELEX 		0.757 0.833
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000068039 C2H2 ZF 174 196
ENSDARP00000068039 C2H2 ZF 200 222
ENSDARP00000068039 C2H2 ZF 228 250
ENSDARP00000068039 C2H2 ZF 256 276

Links

Other C2H2 ZF family TFs
Other Danio rerio TFs

21 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSTNIG00000004434 Tetraodon nigroviridis ENSTNIG00000004434 I 0.792
snai3 Takifugu rubripes ENSTRUG00000002385 I 0.780
XP_002933720 Xenopus tropicalis XP_002933720 N 0.769
ENSETEG00000016371 Echinops telfairi ENSETEG00000016371 I 0.760
SNAI1 Bos taurus ENSBTAG00000014554 I 0.757
SNAI1 Callithrix jacchus ENSCJAG00000000518 I 0.757
SNAI1 Cavia porcellus ENSCPOG00000026663 I 0.757
ENSCSAG00000015065 Chlorocebus sabaeus ENSCSAG00000015065 I 0.757
SNAI1 Homo sapiens ENSG00000124216 D 0.757
SNAI1 Gorilla gorilla ENSGGOG00000024422 I 0.757
ENSMICG00000011160 Microcebus murinus ENSMICG00000011160 I 0.757
ENSMMUG00000019719 Macaca mulatta ENSMMUG00000019719 I 0.757
ENSNLEG00000006985 Nomascus leucogenys ENSNLEG00000006985 I 0.757
ENSOARG00000013174 Ovis aries ENSOARG00000013174 I 0.757
SNAI1 Otolemur garnettii ENSOGAG00000030111 I 0.757
ENSPANG00000007536 Papio anubis ENSPANG00000007536 I 0.757
SNAI1 Pan troglodytes ENSPTRG00000013614 I 0.757
SNAI1 Pteropus vampyrus ENSPVAG00000004119 I 0.757
ENSSTOG00000005866 Ictidomys tridecemlineatus ENSSTOG00000005866 I 0.757
SNAI1 Tursiops truncatus ENSTTRG00000002029 I 0.757
ENSBTAP00000019345-D1 Bos grunniens ENSBTAP00000019345-D1 I 0.757