fgenesh2_kg.5__1344__AT3G49930.1 (Arabidopsis lyrata)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 fgenesh2_kg.5__1344__AT3G49930.1 T117360_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G49930
M06814_2.00 		Arabidopsis thaliana
DGATTTC
GAAATCH		 Dap-seq
OMalley et al.(2016)
AT3G49930_col_a 		0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.5__1344__AT3G49930.1 C2H2 ZF 84 106

Links

Other C2H2 ZF family TFs
Other Arabidopsis lyrata TFs

8 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT3G49930 Arabidopsis thaliana AT3G49930 D 0.827
Bo7g099140 Brassica oleracea Bo7g099140 I 0.827
Bostr.6864s0249 Boechera stricta Bostr.6864s0249 I 0.827
Cagra.4491s0013 Capsella grandiflora Cagra.4491s0013 I 0.827
Carubv10017988m.g Capsella rubella Carubv10017988m.g I 0.827
BGIOSGA028423 Oryza indica BGIOSGA028423 I 0.825
ORUFI08G11110 Oryza rufipogon ORUFI08G11110 I 0.825
LjSGA_004510.1 Lotus japonicus LjSGA_004510.1 I 0.785