CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Phyra78502
(
Phytophthora ramorum
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
Phyra78502
T126284_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Phyra78502
C2H2 ZF
331
353
HECPTCNKQFRGRSELQNHIRTH
Phyra78502
C2H2 ZF
359
383
LKCSFAGCSKRYAHSSNLRAHERTH
Phyra78502
C2H2 ZF
389
413
YACHYDGCGKSFAHSVSLKEHIWMH
Phyra78502
C2H2 ZF
419
443
YVCPYEGCQKKFTQVSNFARHKKTH
Links
Other
C2H2 ZF
family TFs
Other
Phytophthora ramorum
TFs
15 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
maker-pve_contig_65-fgenesh-gene-0.18
Pythium vexans
maker-pve_contig_65-fgenesh-gene-0.18
N
0.827
maker-par_contig_1574-fgenesh-gene-0.1
Pythium arrhenomanes
maker-par_contig_1574-fgenesh-gene-0.1
N
0.827
fgenesh_scip_prom.28083.3966
Phytophthora lateralis
fgenesh_scip_prom.28083.3966
N
0.825
fgenesh_scip_prom.46568.5520
Phytophthora kernoviae
fgenesh_scip_prom.46568.5520
N
0.824
maker-pag1_scaffold_198-snap-gene-0.19
Pythium aphanidermatum
maker-pag1_scaffold_198-snap-gene-0.19
N
0.822
Physo127993
Phytophthora sojae
Physo127993
N
0.815
HpaG806957
Hyaloperonospora arabidopsidis
HpaG806957
N
0.815
F443_04902
Phytophthora parasitica
F443_04902
N
0.815
estExt_fgenesh1_kg.C_2620004
Phytophthora capsici
estExt_fgenesh1_kg.C_2620004
N
0.815
PITG_19177
Phytophthora infestans
PITG_19177
N
0.803
PYU1_G011596
Pythium ultimum
PYU1_G011596
N
0.801
ALNC14_027820
Albugo laibachii
ALNC14_027820
N
0.801
maker-pir_contig_91-fgenesh-gene-0.1
Pythium irregulare
maker-pir_contig_91-fgenesh-gene-0.1
N
0.798
maker-piw_contig_312-fgenesh-gene-0.2
Pythium iwayamai
maker-piw_contig_312-fgenesh-gene-0.2
N
0.798
SPRG_08759
Saprolegnia parasitica
SPRG_08759
N
0.767