CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Phyra80976
(
Phytophthora ramorum
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
Phyra80976
T126286_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Phyra80976
C2H2 ZF
74
98
FVCPEVHCGKQFPRSFALRRHMRIH
Phyra80976
C2H2 ZF
104
128
YACDFQGCAQRFNTSGNLSRHKRIH
Phyra80976
C2H2 ZF
134
158
YPCCFETCGKRFNTSTKLKRHMRIH
Phyra80976
C2H2 ZF
166
190
FRCTEATCSWACDNYKEYVQHQKLH
Links
Other
C2H2 ZF
family TFs
Other
Phytophthora ramorum
TFs
11 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Physo134019
Phytophthora sojae
Physo134019
N
0.824
fgenesh_scip_prom.28083.4436
Phytophthora lateralis
fgenesh_scip_prom.28083.4436
N
0.824
F443_18706
Phytophthora parasitica
F443_18706
N
0.822
PITG_20637
Phytophthora infestans
PITG_20637
N
0.819
PITG_14515
Phytophthora infestans
PITG_14515
N
0.819
maker-pve_contig_254-fgenesh-gene-0.2
Pythium vexans
maker-pve_contig_254-fgenesh-gene-0.2
N
0.806
fgenesh_scip_prom.46568.1302
Phytophthora kernoviae
fgenesh_scip_prom.46568.1302
N
0.799
fgenesh_scip_prom.28083.10560
Phytophthora lateralis
fgenesh_scip_prom.28083.10560
N
0.795
maker-pir_contig_580-fgenesh-gene-0.3
Pythium irregulare
maker-pir_contig_580-fgenesh-gene-0.3
N
0.792
PYU1_G013877
Pythium ultimum
PYU1_G013877
N
0.783
maker-pag1_scaffold_323-fgenesh-gene-0.7
Pythium aphanidermatum
maker-pag1_scaffold_323-fgenesh-gene-0.7
N
0.757