ztf-3 (Caenorhabditis elegans)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 WBGene00016905 T131622_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleoplasm. Is expressed in several structures, including pharynx and rectum. [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ztf-3
M00640_2.00		 Caenorhabditis elegans
DGTGTGTR
YACACACH		 PBM
Narasimhan et al.(2015)
pTH10629		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.755 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00640_2.00 C2H2 ZF 51 73
M00640_2.00 C2H2 ZF 79 100

DNA Binding Domains

Protein ID Domain From To Sequence
C53D5.4a C2H2 ZF 231 253
C53D5.4a C2H2 ZF 259 280
C53D5.4b C2H2 ZF 231 253
C53D5.4b C2H2 ZF 259 280
C53D5.4c C2H2 ZF 218 240
C53D5.4c C2H2 ZF 246 267
C53D5.4d C2H2 ZF 218 240
C53D5.4d C2H2 ZF 246 267
C53D5.4e C2H2 ZF 81 103
C53D5.4e C2H2 ZF 109 130
C53D5.4f C2H2 ZF 81 103
C53D5.4f C2H2 ZF 109 130

Links

Other C2H2 ZF family TFs
Other Caenorhabditis elegans TFs

4 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CRE20982 Caenorhabditis remanei CRE20982 I 0.784
CJA01054 Caenorhabditis japonica CJA01054 I 0.772
CBN31040 Caenorhabditis brenneri CBN31040 I 0.768