Afo_R000778 (Aptenodytes forsteri)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Afo_R000778 T132739_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Zic3
M00151_2.00 		Mus musculus
NCMYVBNRNB
VNYNVBRKGN		 PBM
Badis et al.(2009)
Zic3_3119 		0.782 0.981
ZIC3
M02894_2.00 		Homo sapiens
BACCCCCYGCKGYGH
DCRCMGCRGGGGGTV		 SELEX
Jolma et al.(2013)
ZIC3_1 		0.782 0.981
Zic3
M02936_2.00 		Mus musculus
KRCCCCCYGCTGYGH
DCRCAGCRGGGGGYM		 SELEX
Jolma et al.(2013)
Zic3_1 		0.782 0.981
ZIC3
M04491_2.00 		Homo sapiens
VGACCCCCYGCTGTGM
KCACAGCRGGGGGTCB		 SELEX
Yin et al.(2017)
ZIC3_eDBD_HT-SELEX 		0.782 0.981
ZIC3
M04493_2.00 		Homo sapiens
BACCCCCYGCTGYGH
DCRCAGCRGGGGGTV		 SELEX
Yin et al.(2017)
ZIC3_FL_HT-SELEX 		0.782 0.981
ZIC3
M08902_2.00 		Homo sapiens
NVVYHCCTGCTGDGN
NCHCAGCAGGDRBBN		 Misc
Kulakovskiy et al.(2013)
ZIC3_HUMAN.H11MO.0.B 		0.782 0.981
Zic3
M09013_2.00 		Mus musculus
NVVYHCCTGCTGDGN
NCHCAGCAGGDRBBN		 Misc
Kulakovskiy et al.(2013)
ZIC3_MOUSE.H11MO.0.A 		0.782 0.981
ZIC3
M10229_2.00 		Homo sapiens
VRBCMCCCN
NGGGKGVYB		 Transfac
Matys et al.(2006)
V$ZIC3_01 		0.782 0.981
Zic3
M10359_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ZIC3_07 		0.782 0.981
ZIC3
M04492_2.00 		Homo sapiens
NKACCCCCTGCTGTGM
KCACAGCAGGGGGTMN		 SELEX
Yin et al.(2017)
ZIC3_eDBD_Methyl-HT-SELEX 		0.782 0.981
ZIC3
M04494_2.00 		Homo sapiens
BRCCCCCTGCTGTGM
KCACAGCAGGGGGYV		 SELEX
Yin et al.(2017)
ZIC3_FL_Methyl-HT-SELEX 		0.782 0.981
Zic1
M00137_2.00 		Mus musculus
NCMYVBNGNK
MNCNVBRKGN		 PBM
Badis et al.(2009)
Zic1_0991 		0.773 0.916
ZIC1
M02893_2.00 		Homo sapiens
KRCCCCCYGCTGYG
CRCAGCRGGGGGYM		 SELEX
Jolma et al.(2013)
ZIC1_1 		0.773 0.916
ZIC1
M04485_2.00 		Homo sapiens
BVCCMCCYGYHGYGH
DCRCDRCRGGKGGBV		 SELEX
Yin et al.(2017)
ZIC1_eDBD_HT-SELEX 		0.773 0.916
ZIC1
M04487_2.00 		Homo sapiens
BVCCCCCYGCTGYGH
DCRCAGCRGGGGGBV		 SELEX
Yin et al.(2017)
ZIC1_FL_HT-SELEX 		0.773 0.916
ZIC1
M08900_2.00 		Homo sapiens
BMSCHCCCM
KGGGDGSKV		 Misc
Kulakovskiy et al.(2013)
ZIC1_HUMAN.H11MO.0.B 		0.773 0.916
Zic1
M08990_2.00 		Mus musculus
BMSCHCCCM
KGGGDGSKV		 Misc
Kulakovskiy et al.(2013)
ZIC1_MOUSE.H11MO.0.B 		0.773 0.916
ZIC1
M10226_2.00 		Homo sapiens
KRCNMMCYV
BRGKKNGTM		 Transfac
Matys et al.(2006)
V$ZIC1_01 		0.773 0.916
ZIC1
M10227_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ZIC1_Q2 		0.773 0.916
ZIC1
M04486_2.00 		Homo sapiens
BACCCCCYRCTGTGM
KCACAGYRGGGGGTV		 SELEX
Yin et al.(2017)
ZIC1_eDBD_Methyl-HT-SELEX 		0.773 0.916
ZIC1
M04488_2.00 		Homo sapiens
BRCCCCCTGCTGTGH
DCACAGCAGGGGGYV		 SELEX
Yin et al.(2017)
ZIC1_FL_Methyl-HT-SELEX 		0.773 0.916
ZIC4
M02912_2.00 		Homo sapiens
KRCCCCCYGYDGNGH
DCNCHRCRGGGGGYM		 SELEX
Jolma et al.(2013)
ZIC4_1 		0.759 0.860
ZIC4
M04566_2.00 		Homo sapiens
BVCMHCMYRYNRYGH
DCRYNRYRKGDKGBV		 SELEX
Yin et al.(2017)
ZIC4_eDBD_HT-SELEX 		0.759 0.860
ZIC4
M04567_2.00 		Homo sapiens
BRCCHCCYRYBGTKH
DMACVRYRGGDGGYV		 SELEX
Yin et al.(2017)
ZIC4_eDBD_Methyl-HT-SELEX 		0.759 0.860
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Afo_R000778 C2H2 ZF 88 108
Afo_R000778 C2H2 ZF 117 144
Afo_R000778 C2H2 ZF 150 169
Afo_R000778 C2H2 ZF 180 204
Afo_R000778 C2H2 ZF 210 232

Links

Other C2H2 ZF family TFs
Other Aptenodytes forsteri TFs

175 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAPLG00000010556 Anas platyrhynchos ENSAPLG00000010556 I 0.792
ENSFALG00000003772 Ficedula albicollis ENSFALG00000003772 I 0.792
ENSGALG00000006497 Gallus gallus ENSGALG00000006497 I 0.792
ENSMEUG00000014290 Macropus eugenii ENSMEUG00000014290 I 0.792
ZIC3 Monodelphis domestica ENSMODG00000014029 I 0.792
ENSPSIG00000011896 Pelodiscus sinensis ENSPSIG00000011896 I 0.792
ZIC3 Taeniopygia guttata ENSTGUG00000002155 I 0.792
Aan_R004772 Calypte anna Aan_R004772 I 0.792
Alligator_sinensis_CCG005717.1 Alligator sinensis Alligator_sinensis_CCG005717.1 I 0.788
ENSLACG00000014597 Latimeria chalumnae ENSLACG00000014597 I 0.787
zic3 Xenopus tropicalis XB-GENE-480431 I 0.786
zic3.S Xenopus laevis XB-GENE-865376 I 0.786
ENSAMXG00000012325 Astyanax mexicanus ENSAMXG00000012325 I 0.783
zic3 Takifugu rubripes ENSTRUG00000003550 I 0.783
ENSAMEG00000002684 Ailuropoda melanoleuca ENSAMEG00000002684 I 0.782
ZIC3 Bos taurus ENSBTAG00000021413 I 0.782
ZIC3 Canis familiaris ENSCAFG00000018979 I 0.782
ZIC3 Callithrix jacchus ENSCJAG00000013792 I 0.782
ENSCPOG00000002374 Cavia porcellus ENSCPOG00000002374 I 0.782
ENSCSAG00000007453 Chlorocebus sabaeus ENSCSAG00000007453 I 0.782
ZIC3 Dasypus novemcinctus ENSDNOG00000006192 I 0.782
ENSDORG00000014318 Dipodomys ordii ENSDORG00000014318 I 0.782
ZIC3 Equus caballus ENSECAG00000013318 I 0.782
ZIC3 Echinops telfairi ENSETEG00000018846 I 0.782
ZIC3 Felis catus ENSFCAG00000025684 I 0.782
ZIC3 Homo sapiens ENSG00000156925 D 0.782
ZIC3 Gorilla gorilla ENSGGOG00000011914 I 0.782
ZIC3 Myotis lucifugus ENSMLUG00000011691 I 0.782
ENSMPUG00000001786 Mustela putorius furo ENSMPUG00000001786 I 0.782
Zic3 Mus musculus ENSMUSG00000067860 D 0.782
ENSNLEG00000003005 Nomascus leucogenys ENSNLEG00000003005 I 0.782
ENSOARG00000010774 Ovis aries ENSOARG00000010774 I 0.782
ZIC3 Oryctolagus cuniculus ENSOCUG00000009358 I 0.782
ZIC3 Otolemur garnettii ENSOGAG00000011700 I 0.782
ENSPANG00000011357 Papio anubis ENSPANG00000011357 I 0.782
ENSPPYG00000020775 Pongo abelii ENSPPYG00000020775 I 0.782
ZIC3 Pteropus vampyrus ENSPVAG00000011652 I 0.782
Zic3 Rattus norvegicus ENSRNOG00000000861 I 0.782
ZIC3 Sus scrofa ENSSSCG00000012705 I 0.782
ENSSTOG00000024153 Ictidomys tridecemlineatus ENSSTOG00000024153 I 0.782
ENSTSYG00000003356 Tarsius syrichta ENSTSYG00000003356 I 0.782
ENSP00000287538-D1 Bos grunniens ENSP00000287538-D1 I 0.782
ENSP00000287538 Macaca fascicularis ENSP00000287538 I 0.782
Myotis_brandtii_ZIC3_10005513 Myotis brandtii Myotis_brandtii_ZIC3_10005513 I 0.782
zic3 Gasterosteus aculeatus ENSGACG00000017212 I 0.781
ENSLOCG00000015155 Lepisosteus oculatus ENSLOCG00000015155 I 0.781
ENSGMOG00000004438 Gadus morhua ENSGMOG00000004438 I 0.779
ENSMICG00000010339 Microcebus murinus ENSMICG00000010339 I 0.778
ENSLACG00000008525 Latimeria chalumnae ENSLACG00000008525 I 0.775
Ogr05309 Ophisaurus gracilis Ogr05309 I 0.774
ZIC1 Anolis carolinensis ENSACAG00000006947 I 0.773
ENSAMEG00000002149 Ailuropoda melanoleuca ENSAMEG00000002149 I 0.773
ENSAMXG00000010931 Astyanax mexicanus ENSAMXG00000010931 I 0.773
ENSAPLG00000002960 Anas platyrhynchos ENSAPLG00000002960 I 0.773
ZIC1 Callithrix jacchus ENSCJAG00000001524 I 0.773
ENSCSAG00000011409 Chlorocebus sabaeus ENSCSAG00000011409 I 0.773
zic1 Danio rerio ENSDARG00000015567 I 0.773
zic3 Danio rerio ENSDARG00000071497 I 0.773
ZIC1 Dasypus novemcinctus ENSDNOG00000047101 I 0.773
ENSFALG00000007094 Ficedula albicollis ENSFALG00000007094 I 0.773
ZIC1 Felis catus ENSFCAG00000007061 I 0.773
ZIC1 Homo sapiens ENSG00000152977 D 0.773
zic1 Gasterosteus aculeatus ENSGACG00000003678 I 0.773
ENSGALG00000006811 Gallus gallus ENSGALG00000006811 I 0.773
ZIC1 Gorilla gorilla ENSGGOG00000001101 I 0.773
ENSGMOG00000001788 Gadus morhua ENSGMOG00000001788 I 0.773
ZIC1 Loxodonta africana ENSLAFG00000030632 I 0.773
ENSLOCG00000007706 Lepisosteus oculatus ENSLOCG00000007706 I 0.773
ZIC1 Microcebus murinus ENSMICG00000014401 I 0.773
ZIC1 Macaca mulatta ENSMMUG00000004742 I 0.773
ENSMPUG00000011764 Mustela putorius furo ENSMPUG00000011764 I 0.773
Zic1 Mus musculus ENSMUSG00000032368 D 0.773
ENSNLEG00000002407 Nomascus leucogenys ENSNLEG00000002407 I 0.773
ENSOARG00000005434 Ovis aries ENSOARG00000005434 I 0.773
ZIC1 Otolemur garnettii ENSOGAG00000007465 I 0.773
ENSPANG00000005804 Papio anubis ENSPANG00000005804 I 0.773
ENSPSIG00000004881 Pelodiscus sinensis ENSPSIG00000004881 I 0.773
ENSPSIG00000005002 Pelodiscus sinensis ENSPSIG00000005002 I 0.773
ZIC1 Pan troglodytes ENSPTRG00000015501 I 0.773
Zic1 Rattus norvegicus ENSRNOG00000014644 I 0.773
ENSSHAG00000015091 Sarcophilus harrisii ENSSHAG00000015091 I 0.773
ZIC1 Sus scrofa ENSSSCG00000011692 I 0.773
ENSSTOG00000000952 Ictidomys tridecemlineatus ENSSTOG00000000952 I 0.773
ZIC1 Taeniopygia guttata ENSTGUG00000008838 I 0.773
zic1 Takifugu rubripes ENSTRUG00000017760 I 0.773
ZIC1 Tursiops truncatus ENSTTRG00000014350 I 0.773
Aan_R013349 Calypte anna Aan_R013349 I 0.773
Alligator_sinensis_CCG012204.1 Alligator sinensis Alligator_sinensis_CCG012204.1 I 0.773
Cmyd_10020767 Chelonia mydas Cmyd_10020767 I 0.773
ENSP00000282928-D1 Bos grunniens ENSP00000282928-D1 I 0.773
ENSP00000282928 Macaca fascicularis ENSP00000282928 I 0.773
Gfo_R005436 Geospiza fortis Gfo_R005436 I 0.773
Myotis_brandtii_ZIC1_10009541 Myotis brandtii Myotis_brandtii_ZIC1_10009541 I 0.773
Pvit_01479 Pogona vitticeps Pvit_01479 I 0.773
XP_002937379 Xenopus tropicalis XP_002937379 I 0.773
ENSFALG00000007091 Ficedula albicollis ENSFALG00000007091 I 0.771
ENSMODG00000021250 Monodelphis domestica ENSMODG00000021250 I 0.771
ENSONIG00000002716 Oreochromis niloticus ENSONIG00000002716 I 0.771
zic3 Oryzias latipes ENSORLG00000001654 I 0.771
ENSPFOG00000012982 Poecilia formosa ENSPFOG00000012982 I 0.771
zic1 Tetraodon nigroviridis ENSTNIG00000012758 I 0.771
ENSXMAG00000009164 Xiphophorus maculatus ENSXMAG00000009164 I 0.771
ENSXMAG00000013404 Xiphophorus maculatus ENSXMAG00000013404 I 0.771
Alligator_sinensis_CCG012205.1 Alligator sinensis Alligator_sinensis_CCG012205.1 I 0.771
Ogr15027 Ophisaurus gracilis Ogr15027 I 0.771
Pvit_01478 Pogona vitticeps Pvit_01478 I 0.771
zic4.L Xenopus laevis XB-GENE-1033019 I 0.771
zic3 Tetraodon nigroviridis ENSTNIG00000016841 I 0.770
ZIC1 Bos taurus ENSBTAG00000014751 I 0.769
ENSMEUG00000009632 Macropus eugenii ENSMEUG00000009632 I 0.769
ZIC3 Sorex araneus ENSSARG00000012492 I 0.769
Ogr15030 Ophisaurus gracilis Ogr15030 I 0.769
zic4 Xenopus tropicalis XB-GENE-1033015 I 0.769
ZIC1 Equus caballus ENSECAG00000020355 I 0.768
ENSTGUG00000008837 Taeniopygia guttata ENSTGUG00000008837 I 0.767
zic4 Danio rerio ENSDARG00000031307 I 0.766
zic1.S Xenopus laevis XB-GENE-864815 I 0.765
zic4 Gasterosteus aculeatus ENSGACG00000003685 I 0.764
ENSGMOG00000001798 Gadus morhua ENSGMOG00000001798 I 0.764
ENSONIG00000005878 Oreochromis niloticus ENSONIG00000005878 I 0.764
zic4 Oryzias latipes ENSORLG00000010055 I 0.764
ENSPFOG00000014007 Poecilia formosa ENSPFOG00000014007 I 0.764
zic4 Tetraodon nigroviridis ENSTNIG00000012759 I 0.764
zic4 Takifugu rubripes ENSTRUG00000017765 I 0.764
ENSXMAG00000009162 Xiphophorus maculatus ENSXMAG00000009162 I 0.764
ENSLOCG00000007717 Lepisosteus oculatus ENSLOCG00000007717 I 0.763
zic1 Oryzias latipes ENSORLG00000010050 I 0.763
ENSPSIG00000009132 Pelodiscus sinensis ENSPSIG00000009132 I 0.762
Cmyd_10016552 Chelonia mydas Cmyd_10016552 I 0.762
ENSAPLG00000003027 Anas platyrhynchos ENSAPLG00000003027 I 0.761
ENSONIG00000005875 Oreochromis niloticus ENSONIG00000005875 I 0.761
ENSPFOG00000013981 Poecilia formosa ENSPFOG00000013981 I 0.761
ENSACAG00000003681 Anolis carolinensis ENSACAG00000003681 I 0.760
zic2a Danio rerio ENSDARG00000015554 I 0.760
ENSLOCG00000003077 Lepisosteus oculatus ENSLOCG00000003077 I 0.760
ZIC2 Monodelphis domestica ENSMODG00000007718 I 0.760
Ogr17255 Ophisaurus gracilis Ogr17255 I 0.760
Pvit_14047 Pogona vitticeps Pvit_14047 I 0.760
zic2.L Xenopus laevis XB-GENE-482658 I 0.760
zic2.S Xenopus laevis XB-GENE-6251643 I 0.760
ENSAMEG00000002144 Ailuropoda melanoleuca ENSAMEG00000002144 I 0.759
ZIC4 Bos taurus ENSBTAG00000014749 I 0.759
ZIC4 Canis familiaris ENSCAFG00000008194 I 0.759
ZIC4 Cavia porcellus ENSCPOG00000010981 I 0.759
ENSCSAG00000011405 Chlorocebus sabaeus ENSCSAG00000011405 I 0.759
ZIC4 Dasypus novemcinctus ENSDNOG00000001881 I 0.759
ZIC4 Equus caballus ENSECAG00000020070 I 0.759
ZIC4 Erinaceus europaeus ENSEEUG00000000251 I 0.759
ZIC4 Felis catus ENSFCAG00000007059 I 0.759
ZIC4 Homo sapiens ENSG00000174963 D 0.759
ZIC4 Gorilla gorilla ENSGGOG00000008924 I 0.759
ZIC4 Microcebus murinus ENSMICG00000014391 I 0.759
ZIC4 Macaca mulatta ENSMMUG00000004741 I 0.759
ENSMPUG00000011767 Mustela putorius furo ENSMPUG00000011767 I 0.759
Zic4 Mus musculus ENSMUSG00000036972 I 0.759
ENSNLEG00000002375 Nomascus leucogenys ENSNLEG00000002375 I 0.759
ZIC4 Ornithorhynchus anatinus ENSOANG00000007364 I 0.759
ZIC4 Oryctolagus cuniculus ENSOCUG00000010959 I 0.759
ENSPANG00000024745 Papio anubis ENSPANG00000024745 I 0.759
ENSPPYG00000014188 Pongo abelii ENSPPYG00000014188 I 0.759
ZIC4 Pan troglodytes ENSPTRG00000015500 I 0.759
ZIC4 Pteropus vampyrus ENSPVAG00000003870 I 0.759
Zic4 Rattus norvegicus ENSRNOG00000014871 I 0.759
ZIC4 Sus scrofa ENSSSCG00000011693 I 0.759
ENSSTOG00000015977 Ictidomys tridecemlineatus ENSSTOG00000015977 I 0.759
ZIC4 Tursiops truncatus ENSTTRG00000014343 I 0.759
ENSP00000397695-D1 Bos grunniens ENSP00000397695-D1 I 0.759
ENSP00000397695 Macaca fascicularis ENSP00000397695 I 0.759
Myotis_brandtii_Zic4_10009542 Myotis brandtii Myotis_brandtii_Zic4_10009542 I 0.759
ENSAMXG00000002320 Astyanax mexicanus ENSAMXG00000002320 I 0.757
ENSGALG00000006810 Gallus gallus ENSGALG00000006810 I 0.757
ENSAMXG00000010941 Astyanax mexicanus ENSAMXG00000010941 I 0.756
ENSSHAG00000003850 Sarcophilus harrisii ENSSHAG00000003850 I 0.756
SMAR005380 Strigamia maritima SMAR005380 I 0.756
estExt_gwp.C_400285 Branchiostoma floridae estExt_gwp.C_400285 I 0.756